RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA283169" and tax_phylum = "Evosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Evosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA283169 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6749521 6749521 PRJNA283169_S_NODE_906_length_276_cov_0.118943_g892_i0 PRJNA283169 906 276 0.118943 0.32828268 Protostelium mycophagum 472931 Evosea other_Eukaryota 453 5.9500000000000005e-123   NTclustered gi|262262901|gb|FJ766444.1| 472931 g892 i0 99.597 36.9673913043478 248 1 100 0 1 248 335 88 Protostelium mycophagum strain BRNFDF05-11A-3 small subunit ribosomal RNA gene, partial sequence blastn 10203 453 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
22048272 22048272 PRJNA283169_P_NODE_5478_length_183_cov_1.089552_g5415_i0 PRJNA283169 5478 183 1.089552 1.99388016 Protostelium mycophagum 472931 Evosea other_Eukaryota 339 1.07e-88   NTclustered gi|262262901|gb|FJ766444.1| 472931 g5415 i0 100 9.58469945355191 183 0 100 0 1 183 791 609 Protostelium mycophagum strain BRNFDF05-11A-3 small subunit ribosomal RNA gene, partial sequence blastn 1754 339 1 Eukaryota Amoebozoa   Evosea Variosea Protosteliida Protosteliaceae Protostelium Protostelium mycophagum
28527083 28527083 PRJNA283169_S_NODE_3387_length_162_cov_1.336283_g3373_i0 PRJNA283169 3387 162 1.336283 2.16477846 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 57.8 2.02e-8   NR KAH3757229.1 1580589 g3373 i0 64.9 0.685185185185185 37 13 68.5 0 112 2 46 82 KAH3757229.1 hypothetical protein Pelo_10959 [Pelomyxa schiedti] diamond 111 57.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
31306368 31306368 PRJNA283169_P_NODE_1015_length_389_cov_1.117647_g953_i0 PRJNA283169 1015 389 1.117647 4.34764683 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 82.8 1.89e-15   NR KAH3765284.1 1580589 g953 i0 41.1 0.994858611825193 129 64 99.5 1 2 388 293 409 KAH3765284.1 kinesin family member 3 [Pelomyxa schiedti] diamond 387 82.8 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;