RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA283169", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA283169 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371803 371803 PRJNA283169_P_NODE_6381_length_169_cov_1.733333_g6318_i0 PRJNA283169 6381 169 1.733333 2.92933277 Desulfuromonas sp. DDH964 1823759 Bacteria Bacteria 141 2.93e-29   NTclustered gi|1015516084|gb|CP015080.1| 1823759 g6318 i0 89.474 2.69822485207101 114 9 66 2 14 124 2846962 2847075 Desulfuromonas sp. DDH964 chromosome, complete genome blastn 456 141 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Desulfuromonadaceae Desulfuromonas Desulfuromonas sp. DDH964
4198868 4198868 PRJNA283169_P_NODE_2224_length_275_cov_1.079646_g2162_i0 PRJNA283169 2224 275 1.079646 2.9690265 uncultured Desulfosarcina sp. 218289 Bacteria Bacteria 189 1.8499999999999993e-43   NTclustered gi|2621713517|emb|OY771548.1| 218289 g2162 i0 84.974 311.832727272727 193 21 69 7 6 195 92241 92428 MAG: uncultured Desulfosarcina sp. isolate c75788b4-9dc9-432e-af07-dc879bdb42fc genome assembly, chromosome: 1 blastn 85754 189 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosarcinaceae Desulfosarcina uncultured Desulfosarcina sp.
26870621 26870621 PRJNA283169_P_NODE_3621_length_218_cov_1.479290_g3558_i0 PRJNA283169 3621 218 1.47929 3.2248522 Bacteria 2 Bacteria Bacteria 59.7 2.67e-8   NR MDY6905823.1 2202153 g3558 i0 49.2 1.69266055045872 61 28 79.8 1 43 216 136 196 MDY6905823.1 glycosyltransferase family 4 protein [Thermodesulfobacteriota bacterium] diamond 369 60.1 0.993344425956739 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
27755427 27755427 PRJNA283169_P_NODE_6264_length_171_cov_1.270492_g6201_i0 PRJNA283169 6264 171 1.270492 2.17254132 root 1 Root_unresolved Root_unresolved 45.4 0.00128   NR MCP3899137.1 2049433 g6201 i0 41.7 8.07017543859649 48 28 84.2 0 171 28 77 124 MCP3899137.1 HNH endonuclease [Desulfobacteraceae bacterium] diamond 1380 45.8 0.991266375545852 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
28558596 28558596 PRJNA283169_P_NODE_647_length_478_cov_1.069930_g585_i0 PRJNA283169 647 478 1.06993 5.1142654 Syntrophaceae bacterium 2052184 Bacteria Bacteria 63.2 1.7e-9   NR MBN1545415.1 2052184 g585 i0 68.3 0.257322175732218 41 13 25.7 0 345 467 1 41 MBN1545415.1 HNH endonuclease [Syntrophaceae bacterium] diamond 123 63.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae   Syntrophaceae bacterium
29158532 29158532 PRJNA283169_S_NODE_3009_length_168_cov_0.184874_g2995_i0 PRJNA283169 3009 168 0.184874 0.31058832 Syntrophobacter sp. 66700 Bacteria Bacteria 45.4 0.00148   NR MEN6441859.1 66700 g2995 i0 72.4 1.16071428571429 29 8 51.8 0 149 63 268 296 MEN6441859.1 site-specific DNA-methyltransferase [Syntrophobacter sp.] diamond 195 45.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophobacteria Syntrophobacterales Syntrophobacteraceae Syntrophobacter Syntrophobacter sp.
29663153 29663153 PRJNA283169_P_NODE_3630_length_218_cov_1.177515_g3567_i0 PRJNA283169 3630 218 1.177515 2.5669827 Geobacter sp. SVR 2495594 Bacteria Bacteria 58.5 5.75e-8   NR WP_173202292.1 2495594 g3567 i0 41.1 1.0045871559633 73 35 92.2 2 203 3 30 100 WP_173202292.1 hypothetical protein [Geobacter sp. SVR] diamond 219 58.5 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sp. SVR
30073979 30073979 PRJNA283169_P_NODE_7772_length_163_cov_0.912281_g7709_i0 PRJNA283169 7772 163 0.912281 1.48701803 Fundidesulfovibrio soli 2922716 Bacteria Bacteria 62.4 1.47e-9   NR WP_243366459.1 2922716 g7709 i0 63 1.69325153374233 46 17 84.7 0 139 2 260 305 WP_243366459.1 DNA primase family protein [Fundidesulfovibrio soli] diamond 276 62.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Fundidesulfovibrio Fundidesulfovibrio soli
31085192 31085192 PRJNA283169_P_NODE_4055_length_208_cov_1.150943_g3992_i0 PRJNA283169 4055 208 1.150943 2.39396144 Smithella sp. 2053614 Bacteria Bacteria 74.3 5.07e-14   NR MEN6623838.1 2053614 g3992 i0 52.3 0.9375 65 31 93.8 0 11 205 22 86 MEN6623838.1 hypothetical protein [Smithella sp.] diamond 195 74.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
31559682 31559682 PRJNA283169_S_NODE_2276_length_189_cov_0.100000_g2262_i0 PRJNA283169 2276 189 0.1 0.189 Syntrophales bacterium LBB04 2914040 Bacteria Bacteria 44.3 0.00527   NR MCG6537805.1 2914040 g2262 i0 38 0.793650793650794 50 31 79.4 0 13 162 317 366 MCG6537805.1 hypothetical protein [Syntrophales bacterium LBB04] diamond 150 44.3 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium LBB04

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;