contig_metadata
5 rows where bioproject = "PRJNA283169", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 371794 | 371794 | PRJNA283169_P_NODE_5501_length_182_cov_1.533835_g5438_i0 | PRJNA283169 | 5501 | 182 | 1.533835 | 2.7915797 | Arcobacteraceae bacterium | 2808971 | Bacteria | Bacteria | 147 | 6.899999999999999e-31 | NTclustered | gi|2621713474|emb|OY771505.1| | 2808971 | g5438 | i0 | 84.211 | 78.6153846153846 | 152 | 23 | 84 | 1 | 31 | 182 | 79102 | 79252 | MAG: Arcobacteraceae bacterium isolate 2add6294-6f5d-422d-8d5e-cb49cf879a66 genome assembly, chromosome: 1 | blastn | 14308 | 147 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Arcobacteraceae | Arcobacteraceae bacterium | |||
| 2922468 | 2922468 | PRJNA283169_P_NODE_8163_length_162_cov_0.893805_g8100_i0 | PRJNA283169 | 8163 | 162 | 0.893805 | 1.4479641 | Helicobacter sp. MIT 99-5507 | 152489 | Bacteria | Bacteria | 110 | 7.89e-20 | NTclustered | gi|50957179|gb|AY596264.1| | 152489 | g8100 | i0 | 91.25 | 0.493827160493827 | 80 | 7 | 49 | 0 | 56 | 135 | 207 | 128 | Helicobacter sp. MIT 99-5507 23S ribosomal RNA gene, partial sequence | blastn | 80 | 110 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter sp. MIT 99-5507 | ||
| 15674453 | 15674453 | PRJNA283169_P_NODE_1033_length_387_cov_1.047337_g971_i0 | PRJNA283169 | 1033 | 387 | 1.047337 | 4.05319419 | Campylobacterales bacterium | 2268180 | Bacteria | Bacteria | 246 | 5.64e-79 | NR | MDD3467355.1 | 2268180 | g971 | i0 | 94.6 | 3 | 129 | 7 | 100 | 0 | 387 | 1 | 107 | 235 | MDD3467355.1 aspartate-semialdehyde dehydrogenase [Campylobacterales bacterium] | diamond | 1161 | 246 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacterales bacterium | ||||
| 32666256 | 32666256 | PRJNA283169_P_NODE_7480_length_164_cov_0.913043_g7417_i0 | PRJNA283169 | 7480 | 164 | 0.913043 | 1.49739052 | Helicobacter pylori | 210 | Bacteria | Bacteria | 64.3 | 7.34e-12 | NR | GAA8798126.1 | 210 | g7417 | i0 | 100 | 0.49390243902439 | 27 | 0 | 49.4 | 0 | 2 | 82 | 6 | 32 | GAA8798126.1 hypothetical protein Kyoto149A_1450 [Helicobacter pylori] | diamond | 81 | 64.3 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori | ||
| 32823780 | 32823780 | PRJNA283169_P_NODE_3840_length_213_cov_1.243902_g3777_i0 | PRJNA283169 | 3840 | 213 | 1.243902 | 2.64951126 | Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 | 1802243 | Bacteria | Bacteria | 125 | 3.77e-33 | NR | OHD85708.1 | 1802243 | g3777 | i0 | 81.4 | 0.985915492957746 | 70 | 13 | 98.6 | 0 | 211 | 2 | 65 | 134 | OHD85708.1 MAG: hypothetical protein A3J39_05920 [Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8] | diamond | 210 | 125 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Sulfurimonadaceae | Sulfuricurvum | Sulfuricurvum sp. RIFCSPHIGHO2_12_FULL_44_8 |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;