RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA283169", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA283169 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9987119 9987119 PRJNA283169_P_NODE_6328_length_170_cov_1.446281_g6265_i0 PRJNA283169 6328 170 1.446281 2.4586777 Parachlamydia 83551 Bacteria Bacteria 268 1.3e-67   NTclustered gi|470491594|ref|NR_077046.1| 83552 g6265 i0 95.294 253.894117647059 170 7 100 1 1 170 453 621 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 43162 268 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
26616956 26616956 PRJNA283169_P_NODE_5841_length_177_cov_1.578125_g5778_i0 PRJNA283169 5841 177 1.578125 2.79328125 Bacteria 2 Bacteria Bacteria 90.9 9.14e-21   NR MCB1113562.1 2052156 g5778 i0 72.7 2.89830508474576 55 15 93.2 0 173 9 42 96 MCB1113562.1 50S ribosomal protein L3 [Chlamydiia bacterium] diamond 513 90.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia       Chlamydiia bacterium
29316201 29316201 PRJNA283169_P_NODE_6089_length_173_cov_1.669355_g6026_i0 PRJNA283169 6089 173 1.669355 2.88798415 Chlamydiota bacterium 2081524 Bacteria Bacteria 53.1 1.39e-6   NR NGX62301.1 2081524 g6026 i0 43.9 1.95953757225434 57 32 98.8 0 3 173 124 180 NGX62301.1 hypothetical protein [Chlamydiota bacterium] diamond 339 53.1 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;