RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA280983", tax_phylum = "Duplornaviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 5 ✖

tax_phylum 1

  • Duplornaviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA280983 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22048127 22048127 PRJNA280983_P_NODE_1598_length_584_cov_2.942056_g1488_i0 PRJNA280983 1598 584 2.942056 17.18160704 brine shrimp reovirus 1 2900474 Viruses Viruses 1062 0   NTclustered gi|2209095661|gb|OL472736.1| 2900474 g1488 i0 99.486 20.9948630136986 584 3 100 0 1 584 3004 2421 MAG: Brine shrimp reovirus 1 isolate SC/15 segment 3 hypothetical protein gene, complete cds blastn 12261 1062 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales     brine shrimp reovirus 1
27579565 27579565 PRJNA280983_P_NODE_11044_length_162_cov_0.902655_g10929_i0 PRJNA280983 11044 162 0.902655 1.4623011 Helianthus annuus leaf-associated totivirus 6 2883720 Viruses Viruses 50.4 2.32e-5   NR UMQ74227.1 2883720 g10929 i0 55.3 2.7037037037037 47 21 87 0 11 151 77 123 UMQ74227.1 capsid protein [Helianthus annuus leaf-associated totivirus 6] diamond 438 50.4 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Helianthus annuus leaf-associated totivirus 6
29063739 29063739 PRJNA280983_P_NODE_7708_length_204_cov_1.129032_g7593_i0 PRJNA280983 7708 204 1.129032 2.30322528 Erysiphales associated totivirus 6 2719858 Viruses Viruses 58.9 4.48e-8   NR QIP68055.1 2719858 g7593 i0 43.1 0.75 51 29 75 0 52 204 67 117 QIP68055.1 coat protein [Erysiphales associated totivirus 6] diamond 153 58.9 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Erysiphales associated totivirus 6
29410811 29410811 PRJNA280983_P_NODE_3509_length_362_cov_6.361022_g3394_i0 PRJNA280983 3509 362 6.361022 23.02689964 Austropuccinia psidii associated totivirus 2 3367766 Viruses Viruses 135 3.22e-34   NR XHV16799.1 3367766 g3394 i0 59.4 0.878453038674033 106 43 87.8 0 348 31 33 138 XHV16799.1 RNA-dependent RNA polymerase, partial [Austropuccinia psidii associated totivirus 2] diamond 318 135 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Orthototiviridae Totivirus Austropuccinia psidii associated totivirus 2
30484911 30484911 PRJNA280983_P_NODE_10293_length_165_cov_0.879310_g10178_i0 PRJNA280983 10293 165 0.87931 1.4508615 Totiviridae sp. 1955172 Viruses Viruses 93.2 2.14e-20   NR UHS72436.1 1955172 g10178 i0 75.9 0.981818181818182 54 13 98.2 0 163 2 458 511 UHS72436.1 MAG: putative RNA-dependent RNA polymerase [Totiviridae sp.] diamond 162 93.2 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Totiviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;