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contig_metadata

31 rows where bioproject = "PRJNA280983" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA280983 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1059007 1059007 PRJNA280983_P_NODE_5501_length_266_cov_1.861751_g5386_i0 PRJNA280983 5501 266 1.861751 4.95225766 Chordata 7711 Chordata Chordata 54.7 0.007   NTclustered gi|2921976426|gb|CP130422.1| 8855 g5386 i0 100 0.661654135338346 29 0 11 0 136 164 26602771 26602743 Cairina moschata breed yongchun chromosome 7 blastn 176 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
4198774 4198774 PRJNA280983_P_NODE_5564_length_263_cov_23.228972_g5449_i0 PRJNA280983 5564 263 23.228972 61.09219636 Xenopus tropicalis 8364 Chordata Chordata 56.5 0.002   NTclustered gi|91754111|dbj|AB244214.1| 8364 g5449 i0 100 11.8098859315589 30 0 11 0 234 263 30 1 Xenopus (Silurana) tropicalis mRNA for thyroid hormone receptor beta, complete cds blastn 3106 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
5475044 5475044 PRJNA280983_P_NODE_4505_length_309_cov_1.915385_g4390_i0 PRJNA280983 4505 309 1.915385 5.91853965 Python bivittatus 176946 Chordata Chordata 196 1.26e-45   NTclustered gi|1391811451|ref|XM_007445385.2| 176946 g4390 i0 85.87 6.22977346278317 184 26 60 0 2 185 305 122 PREDICTED: Python bivittatus ribosomal protein S25 (RPS25), partial mRNA blastn 1925 196 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Pythonidae Python Python bivittatus
6749342 6749342 PRJNA280983_P_NODE_3686_length_351_cov_1.182119_g3571_i0 PRJNA280983 3686 351 1.182119 4.14923769 Branchiostoma belcheri 7741 Chordata Chordata 220 8.59e-53   NTclustered gi|24266987|gb|AF548335.1| 7741 g3571 i0 79.299 52.965811965812 314 65 89 0 35 348 137 450 Branchiostoma belcheri ribosomal protein S18 mRNA, complete cds blastn 18591 220 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
8024961 8024961 PRJNA280983_P_NODE_7907_length_200_cov_1.013245_g7792_i0 PRJNA280983 7907 200 1.013245 2.02649 Varanus komodoensis 61221 Chordata Chordata 117 6.0700000000000005e-22   NTclustered gi|2117959797|ref|XM_044420548.1| 61221 g7792 i0 89.247 16.125 93 10 47 0 1 93 1190 1282 PREDICTED: Varanus komodoensis actin alpha 1, skeletal muscle (ACTA1), mRNA blastn 3225 117 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
9987093 9987093 PRJNA280983_P_NODE_5748_length_257_cov_3.115385_g5633_i0 PRJNA280983 5748 257 3.115385 8.00653945 root 1 Root_unresolved Root_unresolved 425 1.2e-114   NTclustered gi|2904934840|gb|PQ737764.1| 10090 g5633 i0 100 325.377431906615 230 0 89 0 10 239 255 26 Mus musculus lncRNA174 lncRNA, complete sequence blastn 83622 425 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11850275 11850275 PRJNA280983_P_NODE_2890_length_408_cov_11.100279_g2775_i0 PRJNA280983 2890 408 11.100279 45.28913832 Protobothrops mucrosquamatus 103944 Chordata Chordata 54.7 0.011   NTclustered gi|1002583974|ref|XM_015815362.1| 103944 g2775 i0 92.308 0.0955882352941176 39 1 10 2 1 39 1 37 PREDICTED: Protobothrops mucrosquamatus RE1-silencing transcription factor (LOC107286919), mRNA blastn 39 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Protobothrops Protobothrops mucrosquamatus
11850295 11850295 PRJNA280983_P_NODE_6750_length_228_cov_1.240223_g6635_i0 PRJNA280983 6750 228 1.240223 2.82770844 Styela clava 7725 Chordata Chordata 239 1.45e-58   NTclustered gi|1981775934|ref|XM_039399307.1| 7725 g6635 i0 88.718 80.4210526315789 195 22 86 0 33 227 1407 1213 PREDICTED: Styela clava tubulin beta chain (LOC120332124), mRNA blastn 18336 239 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
13125486 13125486 PRJNA280983_P_NODE_11051_length_162_cov_0.902655_g10936_i0 PRJNA280983 11051 162 0.902655 1.4623011 Gallus gallus 9031 Chordata Chordata 209 7.56e-50   NTclustered gi|297306101|dbj|AB556462.1| 9031 g10936 i0 90.566 19.8703703703704 159 14 100 1 2 160 350 507 Gallus gallus DNA, CENP-A associated sequence, partial sequence, clone: CAIP#159 blastn 3219 209 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
13125487 13125487 PRJNA280983_P_NODE_11271_length_161_cov_0.910714_g11156_i0 PRJNA280983 11271 161 0.910714 1.46624954 Gallus gallus 9031 Chordata Chordata 281 1.57e-71   NTclustered gi|2201755421|ref|XR_005854575.2| 9031 g11156 i0 98.137 1 161 3 100 0 1 161 1976 1816 PREDICTED: Gallus gallus uncharacterized LOC121111882 (LOC121111882), ncRNA blastn 161 281 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Gallus Gallus gallus
13125522 13125522 PRJNA280983_P_NODE_8971_length_180_cov_1.534351_g8856_i0 PRJNA280983 8971 180 1.534351 2.7618318 Rhinatrema bivittatum 194408 Chordata Chordata 52.8 0.015   NTclustered gi|1694542078|ref|XR_003853118.1| 194408 g8856 i0 100 0.466666666666667 28 0 16 0 98 125 1142 1169 PREDICTED: Rhinatrema bivittatum uncharacterized LOC115078451 (LOC115078451), transcript variant X3, ncRNA blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Rhinatrematidae Rhinatrema Rhinatrema bivittatum
13812340 13812340 PRJNA280983_P_NODE_10631_length_164_cov_0.886957_g10516_i0 PRJNA280983 10631 164 0.886957 1.45460948 Bovidae 9895 Chordata Chordata 268 1.25e-67   NTclustered gi|1068294018|gb|KX592814.1| 9913 g10516 i0 96.319 1434.73170731707 163 6 100 0 2 164 5529711 5529549 Bos taurus isolate Dominette_000065F genomic sequence blastn 235296 268 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos taurus
13812358 13812358 PRJNA280983_P_NODE_691_length_889_cov_2.016667_g607_i0 PRJNA280983 691 889 2.016667 17.92816963 Podarcis 42163 Chordata Chordata 54.7 0.025   NTclustered gi|1622036853|ref|XR_003706709.1| 64176 g607 i0 100 0.195725534308211 29 0 3 0 715 743 1003 975 PREDICTED: Podarcis muralis uncharacterized LOC114597094 (LOC114597094), transcript variant X4, ncRNA blastn 174 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis muralis
15086558 15086558 PRJNA280983_P_NODE_10052_length_166_cov_0.871795_g9937_i0 PRJNA280983 10052 166 0.871795 1.4471797 Cricetidae 337677 Chordata Chordata 82.4 1.77e-11   NTclustered gi|1490740482|ref|XM_005343125.3| 79684 g9937 i0 84.524 4.55421686746988 84 11 50 2 84 166 420 338 PREDICTED: Microtus ochrogaster ribosomal protein L10 like (Rpl10l), mRNA blastn 756 82.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Microtus Microtus ochrogaster
15674388 15674388 PRJNA280983_P_NODE_8133_length_195_cov_4.541096_g8018_i0 PRJNA280983 8133 195 4.541096 8.8551372 Cricetulus griseus 10029 Chordata Chordata 56.5 0.001   NTclustered gi|1868070484|ref|XM_035459734.1| 10029 g8018 i0 94.595 5.71282051282051 37 0 19 1 1 37 4887 4853 PREDICTED: Cricetulus griseus transmembrane and coiled-coil domain family 3 (Tmcc3), transcript variant X1, mRNA blastn 1114 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Cricetulus Cricetulus griseus
16361467 16361467 PRJNA280983_P_NODE_7553_length_208_cov_0.830189_g7438_i0 PRJNA280983 7553 208 0.830189 1.72679312 Aves 8782 Chordata Chordata 128 2.94e-25   NTclustered gi|2280374172|ref|XM_049834830.1| 8957 g7438 i0 85.366 10.2211538461538 123 18 59 0 85 207 829 707 PREDICTED: Accipiter gentilis ribosomal protein L8 (RPL8), mRNA blastn 2126 128 1 Eukaryota Opisthokonta Metazoa Chordata Aves Accipitriformes Accipitridae Astur Astur gentilis
18223317 18223317 PRJNA280983_P_NODE_1735_length_558_cov_1.375246_g1625_i0 PRJNA280983 1735 558 1.375246 7.67387268 Pleurodeles waltl 8319 Chordata Chordata 91.6 1.16e-13   NTclustered gi|2833195971|ref|XM_069228677.1| 8319 g1625 i0 83.505 0.173835125448029 97 16 17 0 461 557 1335 1239 PREDICTED: Pleurodeles waltl G protein subunit alpha i1 (GNAI1), mRNA blastn 97 91.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
22048138 22048138 PRJNA280983_P_NODE_4858_length_292_cov_1.259259_g4743_i0 PRJNA280983 4858 292 1.259259 3.67703628 Bombina bombina 8345 Chordata Chordata 134 9.4e-27   NTclustered gi|2445240817|ref|XM_053706482.1| 8345 g4743 i0 85.271 19.9623287671233 129 19 44 0 164 292 790 662 PREDICTED: Bombina bombina ribosomal protein L8 (RPL8), mRNA blastn 5829 134 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
23323686 23323686 PRJNA280983_P_NODE_2719_length_425_cov_1.486702_g2604_i0 PRJNA280983 2719 425 1.486702 6.3184835 Opisthokonta 33154 Chordata Chordata 167 2.22e-49   NR XP_019623368.1 7741 g2604 i0 57.9 25.0941176470588 140 59 98.8 0 1 420 12 151 XP_019623368.1 PREDICTED: 60S ribosomal protein L13a-like [Branchiostoma belcheri] diamond 10665 168 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
24597781 24597781 PRJNA280983_P_NODE_6680_length_230_cov_1.127072_g6565_i0 PRJNA280983 6680 230 1.127072 2.5922656 Lethenteron reissneri 7753 Chordata Chordata 62.1 3.41e-5   NTclustered gi|2635813043|ref|XM_061549290.1| 7753 g6565 i0 100 8.57391304347826 33 0 14 0 127 159 3753 3785 PREDICTED: Lethenteron reissneri sex-determining region Y protein-like (LOC133340853), partial mRNA blastn 1972 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lethenteron Lethenteron reissneri
27642980 27642980 PRJNA280983_P_NODE_5144_length_279_cov_4.008696_g5029_i0 PRJNA280983 5144 279 4.008696 11.18426184 Staurois parvus 386267 Chordata Chordata 49.3 1.67e-5   NR CAI9623369.1 386267 g5029 i0 50 0.473118279569892 44 22 47.3 0 159 28 19 62 CAI9623369.1 unnamed protein product [Staurois parvus] diamond 132 49.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27737835 27737835 PRJNA280983_P_NODE_5884_length_253_cov_1.348039_g5769_i0 PRJNA280983 5884 253 1.348039 3.41053867 Xenopus laevis 8355 Chordata Chordata 42.7 0.0348   NR OCT99772.1 8355 g5769 i0 47.7 0.521739130434783 44 23 52.2 0 77 208 47 90 OCT99772.1 hypothetical protein XELAEV_18005553mg [Xenopus laevis] diamond 132 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
28007929 28007929 PRJNA280983_P_NODE_7505_length_209_cov_0.956250_g7390_i0 PRJNA280983 7505 209 0.95625 1.9985625 Metazoa 33208 Chordata Chordata 59.3 3.44e-8   NR XP_019639423.1 7741 g7390 i0 38.3 8.21052631578947 60 34 81.8 1 38 208 1035 1094 XP_019639423.1 PREDICTED: uncharacterized protein LOC109481332 [Branchiostoma belcheri] diamond 1716 59.3 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
29979326 29979326 PRJNA280983_P_NODE_7951_length_199_cov_1.320000_g7836_i0 PRJNA280983 7951 199 1.32 2.6268 Ranitomeya imitator 111125 Chordata Chordata 46.2 0.00127   NR CAJ0952439.1 111125 g7836 i0 42.1 0.85929648241206 57 33 85.9 0 198 28 656 712 CAJ0952439.1 unnamed protein product [Ranitomeya imitator] diamond 171 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30422052 30422052 PRJNA280983_P_NODE_8993_length_180_cov_0.778626_g8878_i0 PRJNA280983 8993 180 0.778626 1.4015268 Bufotes viridis 30338 Chordata Chordata 56.6 1.99e-7   NR CAK8609802.1 30338 g8878 i0 70.6 1.16666666666667 34 10 56.7 0 109 8 1 34 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 210 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30484915 30484915 PRJNA280983_P_NODE_7333_length_213_cov_1.036585_g7218_i0 PRJNA280983 7333 213 1.036585 2.20792605 Staurois parvus 386267 Chordata Chordata 48.9 1.31e-5   NR CAI9540006.1 386267 g7218 i0 54.5 0.619718309859155 44 20 62 0 62 193 1 44 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 132 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30642680 30642680 PRJNA280983_P_NODE_11413_length_161_cov_0.910714_g11298_i0 PRJNA280983 11413 161 0.910714 1.46624954 Panurus biarmicus 181101 Chordata Chordata 70.5 2.01e-12   NR NWW34925.1 181101 g11298 i0 60 1.02484472049689 55 20 98.8 1 160 2 1104 1158 NWW34925.1 BMS1 protein [Panurus biarmicus] diamond 165 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sylviidae Panurus Panurus biarmicus
30958882 30958882 PRJNA280983_P_NODE_8074_length_197_cov_0.804054_g7959_i0 PRJNA280983 8074 197 0.804054 1.58398638 Bufotes viridis 30338 Chordata Chordata 42.7 0.02   NR CAK8629749.1 30338 g7959 i0 46.2 1.26395939086294 39 18 54.8 1 156 49 319 357 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 249 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
31274766 31274766 PRJNA280983_P_NODE_1875_length_535_cov_10.430041_g1762_i0 PRJNA280983 1875 535 10.430041 55.80071935 Staurois parvus 386267 Chordata Chordata 58.5 1.63e-7   NR CAI9533415.1 386267 g1762 i0 40 1.89532710280374 110 47 51 4 409 137 1 110 CAI9533415.1 unnamed protein product [Staurois parvus] diamond 1014 58.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
32572076 32572076 PRJNA280983_P_NODE_6959_length_223_cov_1.086207_g6844_i0 PRJNA280983 6959 223 1.086207 2.42224161 Turdus rufiventris 311356 Chordata Chordata 57.4 1.97e-7   NR KAF4797634.1 311356 g6844 i0 83.9 0.766816143497758 31 5 41.7 0 220 128 486 516 KAF4797634.1 hypothetical protein TURU_071784 [Turdus rufiventris] diamond 171 57.4 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Turdidae Turdus Turdus rufiventris
32855134 32855134 PRJNA280983_P_NODE_10400_length_165_cov_0.879310_g10285_i0 PRJNA280983 10400 165 0.87931 1.4508615 Engystomops pustulosus 76066 Chordata Chordata 60.5 7.41e-9   NR KAG8571490.1 76066 g10285 i0 65.9 9.30909090909091 44 15 80 0 132 1 1030 1073 KAG8571490.1 hypothetical protein GDO81_011667 [Engystomops pustulosus] diamond 1536 60.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Leptodactylidae Engystomops Engystomops pustulosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;