RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA280983", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA280983 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29600109 29600109 PRJNA280983_P_NODE_11150_length_162_cov_0.902655_g11035_i0 PRJNA280983 11150 162 0.902655 1.4623011 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 75.5 1.72e-14   NR MDZ4800751.1 2212468 g11035 i0 94.9 0.722222222222222 39 2 72.2 0 161 45 262 300 MDZ4800751.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase [Bryobacteraceae bacterium] diamond 117 75.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31780739 31780739 PRJNA280983_P_NODE_457_length_1077_cov_6.713035_g391_i0 PRJNA280983 457 1077 6.713035 72.29938695 Blastocatellia bacterium AA13 2169413 Bacteria Bacteria 231 1.92e-69   NR PYP84469.1 2169413 g391 i0 43.3 0.86908077994429 312 148 79.4 6 35 889 33 342 PYP84469.1 MAG: hypothetical protein DMF61_19885 [Blastocatellia bacterium AA13] diamond 936 231 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium AA13
32477126 32477126 PRJNA280983_P_NODE_9799_length_167_cov_0.864407_g9684_i0 PRJNA280983 9799 167 0.864407 1.44355969 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 48.9 8.94e-5   NR HZI78749.1 2910147 g9684 i0 51.2 0.736526946107784 41 20 73.7 0 153 31 388 428 HZI78749.1 P-loop NTPase fold protein [Vicinamibacterales bacterium] diamond 123 48.9 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;