RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA280983", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

  • Metazoa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6749347 6749347 PRJNA280983_P_NODE_486_length_1046_cov_3.022066_g417_i0 PRJNA280983 486 1046 3.022066 31.61081036 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 1027 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g417 i0 87.942 41.217017208413 904 67 84 16 172 1046 1 891 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 43113 1027 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
15674379 15674379 PRJNA280983_P_NODE_693_length_888_cov_3.371871_g609_i0 PRJNA280983 693 888 3.371871 29.94221448 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 649 0   NTclustered gi|1369885|gb|L78441.1|SCM14332R 6183 g609 i0 84.914 64.5157657657658 643 95 72 2 3 644 11 652 Schistosoma mansoni 14-3-3-2 mRNA, 3' end of cds blastn 57290 649 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;