RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA280983", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA280983 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371681 371681 PRJNA280983_P_NODE_9621_length_169_cov_1.458333_g9506_i0 PRJNA280983 9621 169 1.458333 2.46458277 Caenorhabditis remanei 31234 Nematoda Nematoda 117 4.93e-22   NTclustered gi|2445357264|ref|XM_003117298.2| 31234 g9506 i0 81.081 6.01775147928994 148 26 87 2 2 148 172 318 Caenorhabditis remanei uncharacterized protein (GCK72_005589), partial mRNA blastn 1017 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
24597787 24597787 PRJNA280983_P_NODE_9440_length_172_cov_1.658537_g9325_i0 PRJNA280983 9440 172 1.658537 2.85268364 Aphelenchoides besseyi 269767 Nematoda Nematoda 84.2 5.12e-12   NTclustered gi|748447428|gb|KP190141.1| 269767 g9325 i0 85.366 0.709302325581395 82 10 47 2 33 113 151 71 Aphelenchoides besseyi isolate Nanjing 14-3-3 protein mRNA, complete cds blastn 122 84.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
30439516 30439516 PRJNA280983_P_NODE_11153_length_162_cov_0.902655_g11038_i0 PRJNA280983 11153 162 0.902655 1.4623011 Metazoa 33208 Nematoda Nematoda 87 2.98e-18   NR KHJ49055.1 68888 g11038 i0 87 9.01851851851852 46 6 85.2 0 24 161 535 580 KHJ49055.1 ribosomal L37ae protein [Trichuris suis] diamond 1461 87 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;