RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA280983" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 6 ✖

bioproject 1

  • PRJNA280983 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24597756 24597756 PRJNA280983_P_NODE_1360_length_638_cov_7.142615_g1254_i0 PRJNA280983 1360 638 7.142615 45.5698837 Viridiplantae 33090 Plants Plants 334 4.5499999999999996e-110   NR KAK9814678.1 41462 g1254 i0 76.5 11.5109717868339 204 48 95.9 0 638 27 288 491 KAK9814678.1 hypothetical protein WJX72_009615 [[Myrmecia] bisecta] diamond 7344 335 0.997014925373134 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
28432166 28432166 PRJNA280983_P_NODE_10286_length_165_cov_0.879310_g10171_i0 PRJNA280983 10286 165 0.87931 1.4508615 Tetradesmus obliquus 3088 Plants Plants 52 6.97e-6   NR WIA17250.1 3088 g10171 i0 51.9 3.92727272727273 54 23 98.2 1 1 162 187 237 WIA17250.1 hypothetical protein OEZ85_014123 [Tetradesmus obliquus] diamond 648 52 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus obliquus
28512922 28512922 PRJNA280983_P_NODE_9447_length_172_cov_1.593496_g9332_i0 PRJNA280983 9447 172 1.593496 2.74081312 Eukaryota 2759 Plants Plants 46.2 2.02e-4   NR KAK9812718.1 41462 g9332 i0 57.1 3.75 42 14 66.3 1 1 114 64 105 KAK9812718.1 hypothetical protein WJX72_002574 [[Myrmecia] bisecta] diamond 645 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia [Myrmecia] bisecta
29870646 29870646 PRJNA280983_P_NODE_8211_length_194_cov_1.055172_g8096_i0 PRJNA280983 8211 194 1.055172 2.04703368 Eukaryota 2759 Plants Plants 89.4 7.290000000000001e-21   NR KAK2076115.1 3111 g8096 i0 74.1 27.819587628866 54 14 83.5 0 189 28 87 140 KAK2076115.1 40S ribosomal protein S23 [Prototheca wickerhamii] diamond 5397 89.7 0.996655518394649 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
30408051 30408051 PRJNA280983_P_NODE_5253_length_275_cov_5.323009_g5138_i0 PRJNA280983 5253 275 5.323009 14.63827475 Volvocaceae 3065 Plants Plants 141 1.35e-36   NR GLC35933.1 330485 g5138 i0 77.3 8.66181818181818 88 20 96 0 266 3 104 191 GLC35933.1 hypothetical protein PLESTM_000384200 [Pleodorina starrii] diamond 2382 142 0.992957746478873 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Pleodorina Pleodorina starrii
32477125 32477125 PRJNA280983_P_NODE_9019_length_179_cov_1.569231_g8904_i0 PRJNA280983 9019 179 1.569231 2.80892349 Bryopsis sp. KO-2 3115439 Plants Plants 65.5 2.22e-11   NR GMH43679.1 3041901 g8904 i0 56.1 6.85474860335195 57 20 95.5 1 172 2 6 57 GMH43679.1 hypothetical protein BSKO_11601 [Bryopsis sp. KO-2023] diamond 1227 65.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. KO-2023

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;