RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA280983", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA280983 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31401539 31401539 PRJNA280983_P_NODE_8156_length_195_cov_1.397260_g8041_i0 PRJNA280983 8156 195 1.39726 2.724657 Phaeodactylum tricornutum CCAP 1 2850 SAR_Eukaryotes SAR_Eukaryotes 49.3 9.08e-5   NR XP_002178319.1 556484 g8041 i0 46.8 0.953846153846154 62 32 95.4 1 193 8 255 315 XP_002178319.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1] diamond 186 49.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
31970654 31970654 PRJNA280983_P_NODE_10938_length_163_cov_0.894737_g10823_i0 PRJNA280983 10938 163 0.894737 1.45842131 Fragilaria crotonensis 210448 SAR_Eukaryotes SAR_Eukaryotes 59.3 1.79e-8   NR KAI2512337.1 210448 g10823 i0 52.1 0.883435582822086 48 23 88.3 0 13 156 66 113 KAI2512337.1 RNA binding-protein [Fragilaria crotonensis] diamond 144 59.3 1 Eukaryota Sar   Bacillariophyta Fragilariophyceae Fragilariales Fragilariaceae Fragilaria Fragilaria crotonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;