RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA280983" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA280983 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5475034 5475034 PRJNA280983_P_NODE_2745_length_422_cov_2.335121_g2630_i0 PRJNA280983 2745 422 2.335121 9.85421062 Dictyostelium discoideum 44689 Evosea other_Eukaryota 418 3.479999999999999e-112   NTclustered gi|66826666|ref|XM_641596.1| 352472 g2630 i0 85.432 93.7559241706161 405 55 95 4 1 403 197 599 Dictyostelium discoideum AX4 hypothetical protein (act8) mRNA, complete cds blastn 39565 418 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
5475061 5475061 PRJNA280983_P_NODE_8585_length_187_cov_1.478261_g8470_i0 PRJNA280983 8585 187 1.478261 2.76434807 Vannella simplex 197532 Discosea other_Eukaryota 272 1.1299999999999999e-68   NTclustered gi|284192582|gb|GQ265380.1| 197532 g8470 i0 97.484 83.1764705882353 159 4 85 0 17 175 683 525 Vannella simplex strain CCAP 1589/3 clone A134.1 18S ribosomal RNA gene, partial sequence blastn 15554 272 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
7436891 7436891 PRJNA280983_P_NODE_2006_length_514_cov_1.251613_g1893_i0 PRJNA280983 2006 514 1.251613 6.43329082 Dictyostelium 5782 Evosea other_Eukaryota 159 2.8799999999999993e-34   NTclustered gi|19110835|gb|AF465313.1| 44689 g1893 i0 78.125 7.41439688715953 256 52 49 3 13 266 3030 2777 Dictyostelium discoideum ABC transporter ABCA.11 (abca11) gene, partial cds blastn 3811 159 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
9299755 9299755 PRJNA280983_P_NODE_9008_length_179_cov_2.000000_g8893_i0 PRJNA280983 9008 179 2 3.58 Vannella simplex 197532 Discosea other_Eukaryota 254 3.87e-63   NTclustered gi|284192584|gb|GQ265382.1| 197532 g8893 i0 100 74.5642458100559 137 0 77 0 15 151 523 387 Vannella simplex strain CCAP 1589/3 clone A134.3 18S ribosomal RNA gene, partial sequence blastn 13347 254 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
15674386 15674386 PRJNA280983_P_NODE_773_length_852_cov_1.668742_g684_i0 PRJNA280983 773 852 1.668742 14.21768184 Polysphondylium violaceum 133409 Evosea other_Eukaryota 448 6.76e-155   NR KAF2071944.1 133409 g684 i0 77.8 1.98943661971831 284 62 100 1 1 852 75 357 KAF2071944.1 hypothetical protein CYY_006738 [Polysphondylium violaceum] diamond 1695 448 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
27327036 27327036 PRJNA280983_P_NODE_483_length_1052_cov_3.755733_g415_i0 PRJNA280983 483 1052 3.755733 39.51031116 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 510 4.6399999999999993e-178   NR PRP72795.1 1890364 g415 i0 66.7 1.00095057034221 351 116 99.8 1 1052 3 62 412 PRP72795.1 hypothetical protein PROFUN_07695 [Planoprotostelium fungivorum] diamond 1053 510 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;