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contig_metadata

20 rows where bioproject = "PRJNA278119" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA278119 · 20 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371306 371306 PRJNA278119_P_NODE_32421_length_174_cov_1.536000_g32172_i0 PRJNA278119 32421 174 1.536 2.67264 Verrucomicrobiota 74201 Bacteria Bacteria 73.6 1.35e-13   NR PAZ00748.1 1982325 g32172 i0 79.1 18.8275862068966 43 9 74.1 0 138 10 1 43 PAZ00748.1 MAG: malate dehydrogenase [Spartobacteria bacterium AMD-G4] diamond 3276 73.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria       Spartobacteria bacterium AMD-G4
4886654 4886654 PRJNA278119_P_NODE_14964_length_280_cov_2.601732_g14715_i0 PRJNA278119 14964 280 2.601732 7.2848496 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 164 7.59e-47   NR MCX6967887.1 2026799 g14715 i0 79.1 6.91071428571429 91 19 97.5 0 274 2 271 361 MCX6967887.1 elongation factor Tu [Verrucomicrobiota bacterium] diamond 1935 164 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
9299658 9299658 PRJNA278119_P_NODE_788_length_1323_cov_38.355573_g658_i0 PRJNA278119 788 1323 38.355573 507.44423079 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 427 4.799999999999999e-145   NR RYD65414.1 2026800 g658 i0 75.5 0.639455782312925 282 66 63.7 2 1011 169 56 335 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 846 427 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
14400132 14400132 PRJNA278119_P_NODE_20312_length_222_cov_0.901734_g20063_i0 PRJNA278119 20312 222 0.901734 2.00184948 Termitidicoccus mucosus 1184151 Bacteria Bacteria 91.3 1.54e-19   NR WP_068772074.1 1184151 g20063 i0 78.3 4.08108108108108 60 13 81.1 0 220 41 31 90 WP_068772074.1 phosphoglycerate kinase [Termitidicoccus mucosus] diamond 906 91.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
14400169 14400169 PRJNA278119_P_NODE_22832_length_207_cov_1.031646_g22583_i0 PRJNA278119 22832 207 1.031646 2.13550722 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 230 7.7999999999999985e-56   NTclustered gi|2874253779|emb|OY969763.1| 412056 g22583 i0 89.247 92.9420289855072 186 16 90 2 5 190 3832565 3832384 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 19239 230 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
14400251 14400251 PRJNA278119_P_NODE_28872_length_184_cov_1.540741_g28623_i0 PRJNA278119 28872 184 1.540741 2.83496344 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 244 2.41e-60   NTclustered gi|2874254040|emb|OY970364.1| 412056 g28623 i0 91.16 105.66847826087 181 14 98 2 1 180 989080 989259 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04463.bin.c.15 genome assembly, chromosome: 1 blastn 19443 244 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
16948788 16948788 PRJNA278119_P_NODE_3754_length_623_cov_1.768293_g3516_i0 PRJNA278119 3754 623 1.768293 11.01646539 Nibricoccus aquaticus 2576891 Bacteria Bacteria 1016 0   NTclustered gi|1243404978|gb|CP023344.1| 2576891 g3516 i0 96.429 106.157303370787 616 22 99 0 6 621 2497075 2497690 Nibricoccus aquaticus strain HZ-65 chromosome, complete genome blastn 66136 1016 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Nibricoccus Nibricoccus aquaticus
18223109 18223109 PRJNA278119_P_NODE_39395_length_166_cov_1.333333_g39146_i0 PRJNA278119 39395 166 1.333333 2.21333278 Actomonas aquatica 2866162 Bacteria Bacteria 75 2.97e-9   NTclustered gi|2647674565|gb|CP139781.1| 2866162 g39146 i0 97.674 0.259036144578313 43 1 26 0 10 52 1672679 1672637 Actomonas aquatica strain WL0086 chromosome, complete genome blastn 43 75 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Actomonas Actomonas aquatica
20772953 20772953 PRJNA278119_P_NODE_45637_length_163_cov_0.912281_g45388_i0 PRJNA278119 45637 163 0.912281 1.48701803 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 176 7.73e-40   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g45388 i0 86.709 4.82822085889571 158 21 97 0 1 158 3216485 3216328 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 787 176 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
21460463 21460463 PRJNA278119_P_NODE_1517_length_993_cov_4.096398_g1334_i0 PRJNA278119 1517 993 4.096398 40.67723214 Nibricoccus 2576890 Bacteria Bacteria 1171 0   NTclustered gi|807238858|gb|CP011265.1| 1637999 g1334 i0 91.924 200.229607250755 842 61 84 7 1 838 1902491 1901653 Verrucomicrobia bacterium IMCC26134, complete genome blastn 198828 1182 0.990693739424704 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
22047651 22047651 PRJNA278119_P_NODE_21338_length_215_cov_1.391566_g21089_i0 PRJNA278119 21338 215 1.391566 2.9918669 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 93.5 1.12e-14   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g21089 i0 93.651 0.423255813953488 63 3 29 1 81 143 4278816 4278755 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 91 93.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
27895207 27895207 PRJNA278119_P_NODE_12785_length_316_cov_1.168539_g12537_i0 PRJNA278119 12785 316 1.168539 3.69258324 Pelagicoccus sp. SDUM812 2921790 Bacteria Bacteria 162 1.85e-48   NR WP_309022849.1 3041266 g12537 i0 69.2 3.80696202531646 104 32 98.7 0 3 314 56 159 WP_309022849.1 sugar O-acetyltransferase [Pelagicoccus sp. SDUM812002] diamond 1203 162 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Pelagicoccaceae Pelagicoccus Pelagicoccus sp. SDUM812002
28621693 28621693 PRJNA278119_P_NODE_907_length_1255_cov_7.249585_g766_i0 PRJNA278119 907 1255 7.249585 90.98229175 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 108 4.34e-21   NR MDA1277427.1 2026799 g766 i0 29.5 0.827091633466135 346 192 76.3 13 1215 259 32 352 MDA1277427.1 protein kinase [Verrucomicrobiota bacterium] diamond 1038 108 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29726346 29726346 PRJNA278119_P_NODE_14010_length_296_cov_0.874494_g13761_i0 PRJNA278119 14010 296 0.874494 2.58850224 Opitutia bacterium 2026771 Bacteria Bacteria 63.2 4.63e-9   NR MEK9633257.1 2026771 g13761 i0 50.9 2.16891891891892 55 27 55.7 0 8 172 382 436 MEK9633257.1 BspA family leucine-rich repeat surface protein [Opitutia bacterium] diamond 642 63.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
29758111 29758111 PRJNA278119_P_NODE_5111_length_529_cov_1.560417_g4867_i0 PRJNA278119 5111 529 1.560417 8.25460593 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 129 1.35e-32   NR RYD71398.1 2026800 g4867 i0 48.9 0.776937618147448 137 68 76.6 2 418 14 60 196 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 411 129 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
30408047 30408047 PRJNA278119_P_NODE_42233_length_165_cov_0.896552_g41984_i0 PRJNA278119 42233 165 0.896552 1.4793108 root 1 Root_unresolved Root_unresolved 65.5 5.4e-11   NR NBY42112.1 2026799 g41984 i0 61.5 5.78181818181818 52 20 94.5 0 161 6 17 68 NBY42112.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 954 65.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31260879 31260879 PRJNA278119_P_NODE_36195_length_168_cov_1.310924_g35946_i0 PRJNA278119 36195 168 1.310924 2.20235232 Opitutus 178440 Bacteria Bacteria 67.8 1.92e-11   NR HYP16395.1 1913982 g35946 i0 58.2 4.94642857142857 55 22 98.2 1 2 166 207 260 HYP16395.1 RICIN domain-containing protein [Opitutus sp.] diamond 831 68.2 0.994134897360704 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp.
31337947 31337947 PRJNA278119_P_NODE_17216_length_251_cov_0.935644_g16967_i0 PRJNA278119 17216 251 0.935644 2.34846644 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 99.4 2.58e-24   NR RYD70705.1 2026800 g16967 i0 56.6 0.99203187250996006 83 35 99.2 1 251 3 50 131 RYD70705.1 MAG: hypothetical protein EOP84_26235 [Verrucomicrobiaceae bacterium] diamond 249 99.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31496388 31496388 PRJNA278119_P_NODE_27136_length_190_cov_1.106383_g26887_i0 PRJNA278119 27136 190 1.106383 2.1021277 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 97.8 1.7000000000000002e-22   NR RYD65414.1 2026800 g26887 i0 80.3 0.963157894736842 61 12 96.3 0 7 189 73 133 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 183 97.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31780701 31780701 PRJNA278119_P_NODE_21197_length_216_cov_1.155689_g20948_i0 PRJNA278119 21197 216 1.155689 2.49628824 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 130 6.7e-34   NR RYD76251.1 2026800 g20948 i0 84.5 1.97222222222222 71 11 98.6 0 3 215 34 104 RYD76251.1 MAG: hypothetical protein EOP84_17160, partial [Verrucomicrobiaceae bacterium] diamond 426 130 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;