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contig_metadata

27 rows where bioproject = "PRJNA278119", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 27 ✖

tax_phylum 1

  • Myxococcota · 27 ✖

tax_kingdom 1

bioproject 1

  • PRJNA278119 · 27 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3609363 3609363 PRJNA278119_P_NODE_33483_length_171_cov_2.311475_g33234_i0 PRJNA278119 33483 171 2.311475 3.95262225 Sandaracinaceae bacterium LLY-WYZ-13_1 3034333 Bacteria Bacteria 96.3 3.5399999999999995e-23   NR HJL14404.1 3034333 g33234 i0 76.8 8.8421052631579 56 13 98.2 0 169 2 66 121 HJL14404.1 superoxide dismutase [Sandaracinaceae bacterium LLY-WYZ-13_1] diamond 1512 96.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae   Sandaracinaceae bacterium LLY-WYZ-13_1
6161588 6161588 PRJNA278119_P_NODE_2445_length_782_cov_3.725784_g2228_i0 PRJNA278119 2445 782 3.725784 29.13563088 Haliangium 162027 Bacteria Bacteria 529 2.9699999999999992e-145   NTclustered gi|470485361|ref|NR_076697.1| 80816 g2228 i0 79.193 117.218670076726 793 141 100 22 1 782 10 789 Haliangium ochraceum strain SMP-2 23S ribosomal RNA gene, complete sequence blastn 91665 529 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae Haliangium Haliangium ochraceum
6748860 6748860 PRJNA278119_P_NODE_23006_length_206_cov_1.324841_g22757_i0 PRJNA278119 23006 206 1.324841 2.72917246 Minicystis rosea 888845 Bacteria Bacteria 195 2.83e-45   NTclustered gi|1127353251|gb|CP016211.1| 888845 g22757 i0 86.022 36.5533980582524 186 21 89 5 13 195 7473510 7473693 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 7530 195 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
11849694 11849694 PRJNA278119_P_NODE_16230_length_263_cov_1.457944_g15981_i0 PRJNA278119 16230 263 1.457944 3.83439272 Nannocystis sp. 1962667 Bacteria Bacteria 283 7.819999999999999e-72   NTclustered gi|1386873111|gb|MF774778.1| 1962667 g15981 i0 89.64 143.072243346008 222 23 84 0 42 263 440 661 Nannocystis sp. strain MNa11734 23S ribosomal RNA gene, partial sequence blastn 37628 283 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis sp.
16948682 16948682 PRJNA278119_P_NODE_29874_length_181_cov_1.431818_g29625_i0 PRJNA278119 29874 181 1.431818 2.59159058 root 1 Root_unresolved Root_unresolved 91.3 1.3e-19   NR HRI65696.1 57 g29625 i0 71.2 70.5082872928177 59 17 97.8 0 177 1 453 511 HRI65696.1 ABC transporter transmembrane domain-containing protein [Polyangium sp.] diamond 12762 92 0.992391304347826 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium sp.
18222790 18222790 PRJNA278119_P_NODE_17115_length_252_cov_1.275862_g16866_i0 PRJNA278119 17115 252 1.275862 3.21517224 Myxococcota bacterium 2818507 Bacteria Bacteria 122 2.44e-33   NR MCK6502336.1 2818507 g16866 i0 72.8 0.964285714285714 81 20 96.4 1 248 6 77 155 MCK6502336.1 peptidylprolyl isomerase [Myxococcota bacterium] diamond 243 122 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
22047722 22047722 PRJNA278119_P_NODE_25438_length_196_cov_1.061224_g25189_i0 PRJNA278119 25438 196 1.061224 2.07999904 Pendulispora brunnea 2905690 Bacteria Bacteria 87.9 4.65e-13   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g25189 i0 83.333 0.969387755102041 96 14 48 2 71 165 12710780 12710874 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 190 87.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
24597371 24597371 PRJNA278119_P_NODE_27680_length_188_cov_1.122302_g27431_i0 PRJNA278119 27680 188 1.122302 2.10992776 Corallococcus sp. EGB 1521117 Bacteria Bacteria 148 2e-31   NTclustered gi|2094564806|gb|CP079946.1| 1521117 g27431 i0 93.069 4.02659574468085 101 7 54 0 88 188 3510007 3509907 Corallococcus sp. EGB chromosome, complete genome blastn 757 148 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. EGB
24597430 24597430 PRJNA278119_P_NODE_31460_length_177_cov_1.210938_g31211_i0 PRJNA278119 31460 177 1.210938 2.14336026 Vulgatibacter incomptus 1391653 Bacteria Bacteria 117 5.23e-22   NTclustered gi|913607065|gb|CP012332.1| 1391653 g31211 i0 81.507 34.6214689265537 146 23 81 4 1 144 2731936 2731793 Vulgatibacter incomptus strain DSM 27710, complete genome blastn 6128 117 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Vulgatibacteraceae Vulgatibacter Vulgatibacter incomptus
26598938 26598938 PRJNA278119_P_NODE_26161_length_193_cov_1.402778_g25912_i0 PRJNA278119 26161 193 1.402778 2.70736154 Archangium lipolyticum 2970465 Bacteria Bacteria 57.4 1.26e-7   NR WP_257450705.1 2970465 g25912 i0 42.6 1.89637305699482 61 35 94.8 0 188 6 528 588 WP_257450705.1 discoidin domain-containing protein [Archangium lipolyticum] diamond 366 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium lipolyticum
27263864 27263864 PRJNA278119_P_NODE_42363_length_165_cov_0.896552_g42114_i0 PRJNA278119 42363 165 0.896552 1.4793108 Myxococcales bacterium 2026763 Bacteria Bacteria 52 6.9e-6   NR MSP60021.1 2026763 g42114 i0 55.6 0.818181818181818 45 19 81.8 1 3 137 171 214 MSP60021.1 porin [Myxococcales bacterium] diamond 135 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27313249 27313249 PRJNA278119_P_NODE_19923_length_224_cov_1.537143_g19674_i0 PRJNA278119 19923 224 1.537143 3.44320032 Myxococcia 32015 Bacteria Bacteria 62 3.03e-10   NR MBL8744555.1 2026763 g19674 i0 43.8 3.96428571428571 73 39 97.8 2 5 223 30 100 MBL8744555.1 hypothetical protein [Myxococcales bacterium] diamond 888 62 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
27484914 27484914 PRJNA278119_P_NODE_39923_length_166_cov_0.888889_g39674_i0 PRJNA278119 39923 166 0.888889 1.47555574 Myxococcales bacterium 2026763 Bacteria Bacteria 88.2 6.59e-21   NR MCB9543525.1 2026763 g39674 i0 80 0.993975903614458 55 11 99.4 0 165 1 48 102 MCB9543525.1 transcription initiation protein [Myxococcales bacterium] diamond 165 88.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28021800 28021800 PRJNA278119_P_NODE_28045_length_187_cov_1.130435_g27796_i0 PRJNA278119 28045 187 1.130435 2.11391345 Myxococcaceae bacterium 2484252 Bacteria Bacteria 63.5 8.27e-10   NR RYZ17952.1 2484252 g27796 i0 48.3 0.962566844919786 60 31 96.3 0 5 184 314 373 RYZ17952.1 MAG: DUF3385 domain-containing protein, partial [Myxococcaceae bacterium] diamond 180 63.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28355001 28355001 PRJNA278119_P_NODE_3626_length_635_cov_1.540956_g3389_i0 PRJNA278119 3626 635 1.540956 9.7850706 Myxococcales 29 Bacteria Bacteria 165 3.54e-44   NR WP_239470296.1 83451 g3389 i0 62.9 13.2661417322835 140 49 66.1 1 422 3 373 509 WP_239470296.1 LysM peptidoglycan-binding domain-containing protein [Archangium violaceum] diamond 8424 165 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
28386584 28386584 PRJNA278119_P_NODE_36206_length_168_cov_1.310924_g35957_i0 PRJNA278119 36206 168 1.310924 2.20235232 Myxococcales 29 Bacteria Bacteria 70.1 3.1e-13   NR ATB34764.1 43 g35957 i0 68.8 2.60714285714286 48 15 85.7 0 6 149 76 123 ATB34764.1 peptidase S8 [Cystobacter fuscus] diamond 438 70.5 0.994326241134752 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
28653174 28653174 PRJNA278119_P_NODE_40647_length_166_cov_0.888889_g40398_i0 PRJNA278119 40647 166 0.888889 1.47555574 Archangium sp. 1872627 Bacteria Bacteria 65.1 1.74e-10   NR HYO70214.1 1872627 g40398 i0 65.2 2.49397590361446 46 16 83.1 0 139 2 142 187 HYO70214.1 kelch repeat-containing protein [Archangium sp.] diamond 414 65.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp.
28747855 28747855 PRJNA278119_P_NODE_4667_length_556_cov_2.222880_g4424_i0 PRJNA278119 4667 556 2.22288 12.3592128 Myxococcota bacterium 2818507 Bacteria Bacteria 140 1.11e-38   NR MEZ4236421.1 2818507 g4424 i0 62.2 1.18705035971223 111 41 59.9 1 157 489 49 158 MEZ4236421.1 peroxiredoxin [Myxococcota bacterium] diamond 660 140 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29112943 29112943 PRJNA278119_P_NODE_4268_length_583_cov_2.288390_g4026_i0 PRJNA278119 4268 583 2.28839 13.3413137 Bacteria 2 Bacteria Bacteria 81.3 9.95e-15   NR MBS2018596.1 2026735 g4026 i0 46.5 0.972555746140652 86 43 43.2 2 239 490 116 200 MBS2018596.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 567 81.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30547993 30547993 PRJNA278119_P_NODE_3953_length_606_cov_7.736086_g3714_i0 PRJNA278119 3953 606 7.736086 46.88068116 Hyalangium sp. 2028555 Bacteria Bacteria 46.6 0.0216   NR HVG59182.1 2028555 g3714 i0 38.5 0.321782178217822 65 37 32.2 1 74 268 71 132 HVG59182.1 Isoquinoline 1-oxidoreductase subunit [Hyalangium sp.] diamond 195 46.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
30800667 30800667 PRJNA278119_P_NODE_41194_length_165_cov_1.344828_g40945_i0 PRJNA278119 41194 165 1.344828 2.2189662 Polyangiaceae bacterium 2268199 Bacteria Bacteria 63.5 5.78e-10   NR MCU0655228.1 2268199 g40945 i0 51.1 1.76363636363636 47 23 85.5 0 155 15 47 93 MCU0655228.1 hypothetical protein [Polyangiaceae bacterium] diamond 291 63.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
31102677 31102677 PRJNA278119_P_NODE_20335_length_221_cov_2.459302_g20086_i0 PRJNA278119 20335 221 2.459302 5.43505742 Pseudomonadati 3379134 Bacteria Bacteria 81.6 1.1e-16   NR MDP3938502.1 2026735 g20086 i0 50 6.74660633484163 74 36 99.1 1 1 219 34 107 MDP3938502.1 glucose 1-dehydrogenase [Deltaproteobacteria bacterium] diamond 1491 81.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31843961 31843961 PRJNA278119_P_NODE_11017_length_349_cov_2.843333_g10770_i0 PRJNA278119 11017 349 2.843333 9.92323217 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 51.2 1.28e-4   NR MBW2593237.1 2026735 g10770 i0 51.1 0.404011461318052 47 23 40.4 0 163 23 451 497 MBW2593237.1 tetratricopeptide repeat protein [Deltaproteobacteria bacterium] diamond 141 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31843994 31843994 PRJNA278119_P_NODE_43137_length_164_cov_0.982609_g42888_i0 PRJNA278119 43137 164 0.982609 1.61147876 Myxococcota bacterium 2818507 Bacteria Bacteria 43.1 0.00939   NR MEM9113965.1 2818507 g42888 i0 50 2.52439024390244 46 20 84.1 2 27 164 427 469 MEM9113965.1 class I SAM-dependent DNA methyltransferase [Myxococcota bacterium] diamond 414 43.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32192242 32192242 PRJNA278119_P_NODE_23078_length_206_cov_0.993631_g22829_i0 PRJNA278119 23078 206 0.993631 2.04687986 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 98.2 5.600000000000001e-23   NR MDD9802787.1 2026735 g22829 i0 57.4 6.78640776699029 68 29 99 0 205 2 91 158 MDD9802787.1 enoyl-CoA hydratase/isomerase family protein [Deltaproteobacteria bacterium] diamond 1398 98.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32382065 32382065 PRJNA278119_P_NODE_39779_length_166_cov_0.888889_g39530_i0 PRJNA278119 39779 166 0.888889 1.47555574 Bradymonadia bacterium 3121696 Bacteria Bacteria 41.2 0.0456   NR MFN3197790.1 3121696 g39530 i0 38 0.903614457831325 50 29 86.7 1 3 146 10 59 MFN3197790.1 GGDEF domain-containing protein [Bradymonadia bacterium] diamond 150 41.2 1 Bacteria   Pseudomonadati Myxococcota Bradymonadia       Bradymonadia bacterium
32886503 32886503 PRJNA278119_P_NODE_36520_length_168_cov_0.873950_g36271_i0 PRJNA278119 36520 168 0.87395 1.468236 Labilithrix sp. 1971228 Bacteria Bacteria 54.3 1.1e-6   NR MFO0734377.1 1971228 g36271 i0 86.2 0.517857142857143 29 4 51.8 0 1 87 298 326 MFO0734377.1 glutathione synthase [Labilithrix sp.] diamond 87 54.3 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;