RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA278119" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8711556 8711556 PRJNA278119_P_NODE_43787_length_164_cov_0.904348_g43538_i0 PRJNA278119 43787 164 0.904348 1.48313072 Mesoplasma 46239 Bacteria Bacteria 62.1 2.27e-5   NTclustered gi|1359432926|gb|CP022507.1| 2149 g43538 i0 94.872 4.73780487804878 39 2 24 0 1 39 161855 161893 Mesoplasma entomophilum strain W17 chromosome blastn 777 62.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Entomoplasmataceae Mesoplasma Mesoplasma entomophilum
15086459 15086459 PRJNA278119_P_NODE_36812_length_168_cov_0.873950_g36563_i0 PRJNA278119 36812 168 0.87395 1.468236 FCB group 1783270 Bacteria Bacteria 311 2.11e-80   NTclustered gi|2606801850|gb|OR661281.1| 3080831 g36563 i0 100 83.6964285714286 168 0 100 0 1 168 322 489 'Vigna unguiculata' witches'-broom phytoplasma isolate HNNK-3 elongation factor Tu (tuf) gene, partial cds blastn 14061 311 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma 'Vigna unguiculata' witches'-broom phytoplasma
20772494 20772494 PRJNA278119_P_NODE_13557_length_303_cov_1.468504_g13309_i0 PRJNA278119 13557 303 1.468504 4.44956712 Mycoplasmopsis edwardii 53558 Bacteria Bacteria 56.5 0.002   NTclustered gi|2425261263|gb|CP114370.1| 53558 g13309 i0 100 0.099009900990099 30 0 10 0 231 260 372392 372421 Mycoplasmopsis edwardii strain felid995 chromosome, complete genome blastn 30 56.5 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis edwardii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;