RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA278119", tax_phylum = "Duplornaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Duplornaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA278119 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3609469 3609469 PRJNA278119_P_NODE_6723_length_459_cov_4.141463_g6477_i0 PRJNA278119 6723 459 4.141463 19.00931517 Botybirnavirus 1918013 Viruses Viruses 385 3.87e-102   NTclustered gi|1787383272|gb|MN552386.1| 2689573 g6477 i0 90.69 1.2636165577342 290 25 63 2 5 294 510 223 Plasmopara viticola lesion associated botybirna 1 isolate DMG-B_DN55388 segment RNA1 RNA dependent RNA polymerase gene, complete cds blastn 580 385 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Botybirnaviridae Botybirnavirus Botybirnavirus shichi
4198717 4198717 PRJNA278119_P_NODE_9244_length_387_cov_1.692308_g8997_i0 PRJNA278119 9244 387 1.692308 6.54923196 Pseudomonas phage phiZ98 2981625 Viruses Viruses 625 1.7399999999999994e-174   NTclustered gi|2316771794|gb|ON960066.1| 2981625 g8997 i0 95.855 1.99741602067183 386 16 99 0 2 387 1675 1290 Pseudomonas phage phiZ98 segment S, complete sequence blastn 773 625 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Cystovirus Pseudomonas phage phiZ98
14400018 14400018 PRJNA278119_P_NODE_13392_length_306_cov_1.011673_g13144_i0 PRJNA278119 13392 306 1.011673 3.09571938 Pseudomonas phage phiZ98 2981625 Viruses Viruses 477 3.969999999999999e-130   NTclustered gi|2316771794|gb|ON960066.1| 2981625 g13144 i0 94.771 1.99346405228758 306 16 100 0 1 306 2204 2509 Pseudomonas phage phiZ98 segment S, complete sequence blastn 610 477 1 Viruses   Orthornavirae Duplornaviricota Vidaverviricetes Mindivirales Cystoviridae Cystovirus Pseudomonas phage phiZ98
17636453 17636453 PRJNA278119_P_NODE_34394_length_169_cov_1.733333_g34145_i0 PRJNA278119 34394 169 1.733333 2.92933277 Botybirnavirus 1918013 Viruses Viruses 145 2.26e-30   NTclustered gi|1787383272|gb|MN552386.1| 2689573 g34145 i0 82.558 2.03550295857988 172 23 100 7 1 169 153 320 Plasmopara viticola lesion associated botybirna 1 isolate DMG-B_DN55388 segment RNA1 RNA dependent RNA polymerase gene, complete cds blastn 344 145 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Botybirnaviridae Botybirnavirus Botybirnavirus shichi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;