RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA278119", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA278119 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26902115 26902115 PRJNA278119_P_NODE_38501_length_167_cov_0.881356_g38252_i0 PRJNA278119 38501 167 0.881356 1.47186452 Pseudomonadati 3379134 Bacteria Bacteria 40.8 0.0347   NR WP_063244855.1 959 g38252 i0 43.5 1.31137724550898 46 22 80.8 2 166 32 45 87 WP_063244855.1 GFA family protein [Bdellovibrio bacteriovorus] diamond 219 40.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
27136870 27136870 PRJNA278119_P_NODE_34722_length_169_cov_1.300000_g34473_i0 PRJNA278119 34722 169 1.3 2.197 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 60.1 3.76e-10   NR MBX9703509.1 2654442 g34473 i0 53.6 0.994082840236686 56 26 99.4 0 169 2 19 74 MBX9703509.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 168 60.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
27327023 27327023 PRJNA278119_P_NODE_47263_length_162_cov_0.920354_g47014_i0 PRJNA278119 47263 162 0.920354 1.49097348 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 43.5 0.00345   NR MBL7714413.1 2053517 g47014 i0 44.7 0.703703703703704 38 21 70.4 0 115 2 1 38 MBL7714413.1 MAPEG family protein [Bdellovibrionales bacterium] diamond 114 43.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27484917 27484917 PRJNA278119_P_NODE_45103_length_163_cov_0.912281_g44854_i0 PRJNA278119 45103 163 0.912281 1.48701803 Bacteriovoracaceae bacterium 2081706 Bacteria Bacteria 82.4 4.61e-18   NR MFL5784421.1 2081706 g44854 i0 70.9 1.01226993865031 55 13 99.4 2 162 1 107 159 MFL5784421.1 DUF1566 domain-containing protein [Bacteriovoracaceae bacterium] diamond 165 82.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae   Bacteriovoracaceae bacterium
29221638 29221638 PRJNA278119_P_NODE_24189_length_201_cov_1.026316_g23940_i0 PRJNA278119 24189 201 1.026316 2.06289516 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 72 1.63e-13   NR MBX9767865.1 2053517 g23940 i0 52.3 0.970149253731343 65 31 97 0 197 3 58 122 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 195 72 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32904229 32904229 PRJNA278119_P_NODE_42200_length_165_cov_0.896552_g41951_i0 PRJNA278119 42200 165 0.896552 1.4793108 Pseudomonadati 3379134 Bacteria Bacteria 50.8 1.77e-5   NR NRA64497.1 2020859 g41951 i0 48 2.56363636363636 50 26 90.9 0 11 160 18 67 NRA64497.1 caspase family protein [Pseudobacteriovorax sp.] diamond 423 50.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;