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contig_metadata

24 rows where bioproject = "PRJNA278119", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

  • Metazoa · 24 ✖

tax_clade 1

bioproject 1

  • PRJNA278119 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2922219 2922219 PRJNA278119_P_NODE_6323_length_475_cov_1.434272_g6077_i0 PRJNA278119 6323 475 1.434272 6.812792 Strongyloides ratti 34506 Nematoda Nematoda 95.1 1.9e-19   NR XP_024504040.1 34506 g6077 i0 53.7 2.60842105263158 82 38 51.8 0 266 21 60 141 XP_024504040.1 Protein disulfide-isomerase [Strongyloides ratti] diamond 1239 95.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
4198667 4198667 PRJNA278119_P_NODE_6384_length_472_cov_5.702128_g6138_i0 PRJNA278119 6384 472 5.702128 26.91404416 Pristionchus pauli 376545 Nematoda Nematoda 292 2.48e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g6138 i0 81.492 4.77966101694915 362 61 76 6 67 425 37 395 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
7436850 7436850 PRJNA278119_P_NODE_48206_length_153_cov_2.365385_g47957_i0 PRJNA278119 48206 153 2.365385 3.61903905 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 134 4.3500000000000006e-27   NTclustered gi|1376147859|ref|XM_024654603.1| 34506 g47957 i0 84.444 18.8366013071895 135 21 88 0 1 135 591 457 Strongyloides ratti Polyubiquitin-C (SRAE_2000341300), partial mRNA blastn 2882 134 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
14400432 14400432 PRJNA278119_P_NODE_42592_length_164_cov_2.017391_g42343_i0 PRJNA278119 42592 164 2.017391 3.30852124 Strongyloides papillosus 174720 Nematoda Nematoda 228 2.1199999999999996e-55   NTclustered gi|687022643|emb|LM525557.1| 174720 g42343 i0 91.975 97.5670731707317 162 13 99 0 1 162 538163 538002 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000003 blastn 16001 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
14400573 14400573 PRJNA278119_P_NODE_8072_length_417_cov_2.817935_g7825_i0 PRJNA278119 8072 417 2.817935 11.75078895 Pristionchus hoplostomus 1355913 Nematoda Nematoda 124 8.379999999999998e-24   NTclustered gi|524845312|gb|KC819366.1| 1355913 g7825 i0 93.902 20.0959232613909 82 5 20 0 186 267 264 183 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 8380 124 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
15673933 15673933 PRJNA278119_P_NODE_25833_length_194_cov_1.441379_g25584_i0 PRJNA278119 25833 194 1.441379 2.79627526 Pristionchus sp. 6 RS5101 358043 Nematoda Nematoda 163 7.41e-36   NTclustered gi|150981863|gb|EF634501.1| 358043 g25584 i0 82.609 96.9123711340206 184 32 95 0 1 184 619 436 Pristionchus sp. 6 RS5101 large subunit ribosomal protein 1 (rpl-1) mRNA, partial cds blastn 18801 163 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 6 RS5101
17636562 17636562 PRJNA278119_P_NODE_5774_length_496_cov_3.165548_g5528_i0 PRJNA278119 5774 496 3.165548 15.70111808 Opisthokonta 33154 Nematoda Nematoda 215 4.91e-68   NR KFD50978.1 68888 g5528 i0 71.6 21.5927419354839 148 42 89.5 0 490 47 51 198 KFD50978.1 hypothetical protein M513_08161, partial [Trichuris suis] diamond 10710 215 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
18222932 18222932 PRJNA278119_P_NODE_26475_length_192_cov_1.090909_g26226_i0 PRJNA278119 26475 192 1.090909 2.09454528 Strongyloides ratti 34506 Nematoda Nematoda 135 1.6e-27   NTclustered gi|1376142193|ref|XM_024651392.1| 34506 g26226 i0 85.827 2.54166666666667 127 18 66 0 66 192 401 275 Strongyloides ratti 60S ribosomal protein L23 (SRAE_2000054900), partial mRNA blastn 488 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
22047660 22047660 PRJNA278119_P_NODE_2218_length_824_cov_2.322581_g2007_i0 PRJNA278119 2218 824 2.322581 19.13806744 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 344 1.08e-115   NR XGW06546.1 6289 g2007 i0 70 51.9902912621359 223 67 81.2 0 10 678 36 258 XGW06546.1 hypothetical protein V3C99_016672 [Haemonchus contortus] diamond 42840 346 0.994219653179191 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Haemonchus Haemonchus contortus
27091826 27091826 PRJNA278119_P_NODE_30582_length_179_cov_1.500000_g30333_i0 PRJNA278119 30582 179 1.5 2.685 root 1 Root_unresolved Root_unresolved 106 5.24e-25   NR KHN87168.1 6265 g30333 i0 82.5 2.93296089385475 57 10 95.5 0 173 3 397 453 KHN87168.1 Aspartate--tRNA ligase, cytoplasmic [Toxocara canis] diamond 525 107 0.990654205607477 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
27579561 27579561 PRJNA278119_P_NODE_9664_length_377_cov_2.213415_g9417_i0 PRJNA278119 9664 377 2.213415 8.34457455 Meloidogyne graminicola 189291 Nematoda Nematoda 57.8 6.66e-7   NR AVZ46778.1 189291 g9417 i0 39.1 0.73209549071618 92 52 73.2 1 100 375 117 204 AVZ46778.1 hypothetical protein [Meloidogyne graminicola] diamond 276 57.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne graminicola
28102341 28102341 PRJNA278119_P_NODE_5425_length_511_cov_9.820346_g5180_i0 PRJNA278119 5425 511 9.820346 50.18196806 Rhabditida 6236 Nematoda Nematoda 131 1.3e-32   NR CAD5234365.1 6326 g5180 i0 45.4 7.10958904109589 152 82 89.2 1 475 20 327 477 CAD5234365.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 3633 131 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
28305790 28305790 PRJNA278119_P_NODE_33726_length_171_cov_1.278689_g33477_i0 PRJNA278119 33726 171 1.278689 2.18655819 Acanthocheilonema viteae 6277 Nematoda Nematoda 63.5 6.31e-10   NR VBB30045.1 6277 g33477 i0 64.6 2.7719298245614 48 17 84.2 0 145 2 79 126 VBB30045.1 unnamed protein product [Acanthocheilonema viteae] diamond 474 63.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
29190036 29190036 PRJNA278119_P_NODE_45369_length_163_cov_0.912281_g45120_i0 PRJNA278119 45369 163 0.912281 1.48701803 Enterobius vermicularis 51028 Nematoda Nematoda 74.7 6.73e-14   NR VDD94536.1 51028 g45120 i0 63 2.98159509202454 54 20 99.4 0 1 162 320 373 VDD94536.1 unnamed protein product [Enterobius vermicularis] diamond 486 74.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
29365499 29365499 PRJNA278119_P_NODE_18429_length_237_cov_1.611702_g18180_i0 PRJNA278119 18429 237 1.611702 3.81973374 root 1 Root_unresolved Root_unresolved 102 2.4299999999999998e-23   NR TKR93211.1 34508 g18180 i0 61.5 25.2911392405063 78 28 98.7 1 234 1 38 113 TKR93211.1 hypothetical protein L596_007708 [Steinernema carpocapsae] diamond 5994 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
29537152 29537152 PRJNA278119_P_NODE_3290_length_668_cov_20.565428_g3055_i0 PRJNA278119 3290 668 20.565428 137.37705904 Mesorhabditis spiculigera 96644 Nematoda Nematoda 105 3.45e-25   NR CAJ0575662.1 96644 g3055 i0 47.5 0.529940119760479 118 58 51.2 1 663 322 9 126 CAJ0575662.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 354 105 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
29902327 29902327 PRJNA278119_P_NODE_45431_length_163_cov_0.912281_g45182_i0 PRJNA278119 45431 163 0.912281 1.48701803 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 47.8 2.11e-4   NR KAI3410178.1 36090 g45182 i0 52.2 3.57055214723926 46 22 84.7 0 1 138 175 220 KAI3410178.1 hypothetical protein GPALN_006538 [Globodera pallida] diamond 582 47.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera pallida
30376572 30376572 PRJNA278119_P_NODE_25292_length_196_cov_2.448980_g25043_i0 PRJNA278119 25292 196 2.44898 4.8000008 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 93.6 9.56e-23   NR XP_024505170.1 34506 g25043 i0 70.3 11.7704081632653 64 19 98 0 1 192 42 105 XP_024505170.1 60S ribosomal protein L31 [Strongyloides ratti] diamond 2307 94 0.995744680851064 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
30832326 30832326 PRJNA278119_P_NODE_13414_length_305_cov_1.656250_g13166_i0 PRJNA278119 13414 305 1.65625 5.0515625 Pristionchus pacificus 54126 Nematoda Nematoda 44.3 0.00458   NR KAF8375339.1 54126 g13166 i0 39.5 0.79672131147541 81 42 72.8 3 13 234 3 83 KAF8375339.1 hypothetical protein PRIPAC_81768 [Pristionchus pacificus] diamond 243 44.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
31514158 31514158 PRJNA278119_P_NODE_15236_length_276_cov_26.022026_g14987_i0 PRJNA278119 15236 276 26.022026 71.82079176 Rhabditida 6236 Nematoda Nematoda 60.1 2.43e-9   NR CRZ22739.1 6279 g14987 i0 62 6.75 50 18 53.3 1 248 102 42 91 CRZ22739.1 BMA-RPL-29 [Brugia malayi] diamond 1863 60.5 0.993388429752066 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
31545675 31545675 PRJNA278119_P_NODE_12056_length_329_cov_6.482143_g11808_i0 PRJNA278119 12056 329 6.482143 21.32625047 Metazoa 33208 Nematoda Nematoda 68.6 8.03e-11   NR VDM49034.1 6265 g11808 i0 75 9.16413373860182 36 9 32.8 0 22 129 2 37 VDM49034.1 unnamed protein product [Toxocara canis] diamond 3015 68.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
32097173 32097173 PRJNA278119_P_NODE_20258_length_222_cov_1.202312_g20009_i0 PRJNA278119 20258 222 1.202312 2.66913264 Pristionchus entomophagus 358040 Nematoda Nematoda 50.8 3.56e-5   NR GMS79790.1 358040 g20009 i0 44.9 2.08108108108108 49 27 66.2 0 158 12 20 68 GMS79790.1 hypothetical protein PENTCL1PPCAC_1965, partial [Pristionchus entomophagus] diamond 462 50.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
32336632 32336632 PRJNA278119_P_NODE_22559_length_208_cov_1.672956_g22310_i0 PRJNA278119 22559 208 1.672956 3.47974848 Metazoa 33208 Nematoda Nematoda 87.4 3.97e-18   NR CAD5222489.1 6326 g22310 i0 63.2 16.6875 68 25 98.1 0 208 5 59 126 CAD5222489.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 3471 87.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
32572048 32572048 PRJNA278119_P_NODE_27159_length_190_cov_1.106383_g26910_i0 PRJNA278119 27159 190 1.106383 2.1021277 Ancylostoma duodenale 51022 Nematoda Nematoda 69.7 6.32e-13   NR KIH49600.1 51022 g26910 i0 70.6 3.31578947368421 51 15 80.5 0 155 3 33 83 KIH49600.1 electron transfer flavoprotein FAD-binding domain protein, partial [Ancylostoma duodenale] diamond 630 69.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma duodenale

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;