RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA278119", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA278119 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28495411 28495411 PRJNA278119_P_NODE_46107_length_162_cov_1.840708_g45858_i0 PRJNA278119 46107 162 1.840708 2.98194696 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 99 2.01e-22   NR MBA2664773.1 2946527 g45858 i0 80.8 0.962962962962963 52 10 96.3 0 4 159 258 309 MBA2664773.1 S-layer homology domain-containing protein [Lujinxingiaceae bacterium] diamond 156 99 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium
29176155 29176155 PRJNA278119_P_NODE_15089_length_279_cov_0.895652_g14840_i0 PRJNA278119 15089 279 0.895652 2.49886908 Bacteria 2 Bacteria Bacteria 60.8 2.22e-8   NR MFP4599384.1 2766932 g14840 i0 36.6 1.51612903225806 71 45 76.3 0 66 278 281 351 MFP4599384.1 DUF4476 domain-containing protein [Persicimonas sp.] diamond 423 60.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;