RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA278119", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28337399 28337399 PRJNA278119_P_NODE_31566_length_176_cov_2.047244_g31317_i0 PRJNA278119 31566 176 2.047244 3.60314944 Methanosphaera sp. 2666342 Archaea Archaea 42.7 0.015   NR MEE3419418.1 2666342 g31317 i0 45.7 1.03977272727273 35 19 59.7 0 106 2 73 107 MEE3419418.1 phospholipid scramblase-related protein [Methanosphaera sp.] diamond 183 42.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
29252779 29252779 PRJNA278119_P_NODE_38189_length_167_cov_0.881356_g37940_i0 PRJNA278119 38189 167 0.881356 1.47186452 uncultured Methanobrevibacter sp. 253161 Archaea Archaea 88.6 9.41e-19   NR WP_297827855.1 253161 g37940 i0 87.3 0.988023952095808 55 7 98.8 0 2 166 531 585 WP_297827855.1 hypothetical protein, partial [uncultured Methanobrevibacter sp.] diamond 165 88.6 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
30327360 30327360 PRJNA278119_P_NODE_19452_length_228_cov_1.162011_g19203_i0 PRJNA278119 19452 228 1.162011 2.64938508 Methanobrevibacter sp. 66852 Archaea Archaea 88.2 4.52e-19   NR MBO7211516.1 66852 g19203 i0 54.8 0.960526315789474 73 33 96.1 0 228 10 149 221 MBO7211516.1 tRNA(His) guanylyltransferase Thg1 family protein [Methanobrevibacter sp.] diamond 219 88.2 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;