RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA278119", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA278119 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14400242 14400242 PRJNA278119_P_NODE_28552_length_185_cov_1.529412_g28303_i0 PRJNA278119 28552 185 1.529412 2.8294122 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 169 1.5e-37   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g28303 i0 87.586 1.02162162162162 145 18 78 0 1 145 1595669 1595525 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 189 169 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
23323574 23323574 PRJNA278119_P_NODE_5879_length_492_cov_1.604966_g5633_i0 PRJNA278119 5879 492 1.604966 7.89643272 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 508 2.37e-139   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g5633 i0 86.383 177.394308943089 470 53 96 3 23 492 1594536 1594994 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 87278 508 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;