RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA278119", tax_clade = "Apusozoa" and tax_superkingdom = "Eukaryota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Apusozoa · 3 ✖

bioproject 1

  • PRJNA278119 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9299178 9299178 PRJNA278119_P_NODE_16468_length_260_cov_1.232227_g16219_i0 PRJNA278119 16468 260 1.232227 3.2037902 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 132 4.03e-35   NR XP_013760592.1 461836 g16219 i0 75.6 1.98461538461538 86 21 99.2 0 3 260 109 194 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 516 132 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
28527017 28527017 PRJNA278119_P_NODE_1767_length_926_cov_2.295325_g1576_i0 PRJNA278119 1767 926 2.295325 21.2547095 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 70.5 8.72e-10   NR XP_013753393.1 461836 g1576 i0 29.4 0.605831533477322 187 105 55.1 7 776 267 64 240 XP_013753393.1 uncharacterized protein AMSG_10185 [Thecamonas trahens ATCC 50062] diamond 561 70.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens
32697638 32697638 PRJNA278119_P_NODE_29000_length_184_cov_1.155556_g28751_i0 PRJNA278119 29000 184 1.155556 2.12622304 Thecamonas trahens ATCC 5 529818 Root_unresolved Root_unresolved 58.5 4.26e-8   NR XP_013760592.1 461836 g28751 i0 71.1 0.619565217391304 38 11 62 0 2 115 301 338 XP_013760592.1 adenine nucleotide translocator [Thecamonas trahens ATCC 50062] diamond 114 58.5 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Thecamonas Thecamonas trahens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;