RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA274362" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA274362 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14399482 14399482 PRJNA274362_S_NODE_19552_length_208_cov_1.257862_g19432_i0 PRJNA274362 19552 208 1.257862 2.61635296 Mus musculus mobilized endogenous polytropic provirus 590745 Viruses Viruses 353 4.46e-93   NTclustered gi|221326511|gb|FJ544576.1| 590745 g19432 i0 97.573 147.586538461538 206 5 99 0 2 207 379 174 Mus musculus mobilized endogenous polytropic provirus clone 5 truncated gag-pol polyprotein (gag) gene, complete cds blastn 30698 353 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Mus musculus mobilized endogenous polytropic provirus
20771763 20771763 PRJNA274362_S_NODE_10957_length_265_cov_1.166667_g10837_i0 PRJNA274362 10957 265 1.166667 3.09166755 Gammaretrovirus murleu 3428959 Viruses Viruses 477 3.369999999999999e-130   NTclustered gi|2228757|gb|U94692.1|RMU94692 11938 g10837 i0 99.617 98.4830188679245 261 1 98 0 5 265 2356 2616 Rauscher murine leukemia virus, complete genome blastn 26098 477 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;