RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA274362", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA274362 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10574294 10574294 PRJNA274362_S_NODE_10329_length_271_cov_1.599099_g10209_i0 PRJNA274362 10329 271 1.599099 4.33355829 uncultured delta proteobacterium 34034 Bacteria Bacteria 366 7.81e-97   NTclustered gi|82523912|emb|AJ937768.1| 34034 g10209 i0 91.111 213.774907749077 270 24 99 0 2 271 259 528 Uncultured delta proteobacterium fosmid clone b1bf1.1.d04 blastn 57933 366 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
24010549 24010549 PRJNA274362_S_NODE_36059_length_164_cov_0.895652_g35939_i0 PRJNA274362 36059 164 0.895652 1.46886928 Bacteria 2 Bacteria Bacteria 226 7.619999999999998e-55   NTclustered gi|927354044|gb|KT322578.1| 34034 g35939 i0 91.463 109.975609756098 164 14 100 0 1 164 31 194 Uncultured delta proteobacterium clone TGR_WLFZ-398 16S ribosomal RNA gene, partial sequence blastn 18036 226 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;