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contig_metadata

24 rows where bioproject = "PRJNA274362", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 24 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 24 ✖

bioproject 1

  • PRJNA274362 · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4197561 4197561 PRJNA274362_S_NODE_18604_length_212_cov_1.533742_g18484_i0 PRJNA274362 18604 212 1.533742 3.25153304 Levipalatum texanum 1486449 Nematoda Nematoda 187 4.9e-43   NTclustered gi|610559467|gb|KJ395558.1| 1486449 g18484 i0 82.87 4.83018867924528 216 29 100 6 1 212 384 173 Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds blastn 1024 187 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum
4198010 4198010 PRJNA274362_S_NODE_5764_length_351_cov_1.549669_g5644_i0 PRJNA274362 5764 351 1.549669 5.43933819 Rhabditida 6236 Nematoda Nematoda 178 1.17e-53   NR VDM44095.1 6265 g5644 i0 76.7 10.9059829059829 116 27 99.1 0 349 2 23 138 VDM44095.1 unnamed protein product [Toxocara canis] diamond 3828 179 0.994413407821229 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
6748284 6748284 PRJNA274362_S_NODE_24946_length_188_cov_2.215827_g24826_i0 PRJNA274362 24946 188 2.215827 4.16575476 Micoletzkya masseyi 1250333 Nematoda Nematoda 126 9.36e-25   NTclustered gi|953064426|gb|KT188926.1| 1250333 g24826 i0 79.33 75.0797872340426 179 37 95 0 9 187 266 88 Micoletzkya masseyi small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 14115 126 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Micoletzkya Micoletzkya masseyi
6748497 6748497 PRJNA274362_S_NODE_34986_length_165_cov_0.896552_g34866_i0 PRJNA274362 34986 165 0.896552 1.4793108 Caenorhabditis remanei 31234 Nematoda Nematoda 111 2.24e-20   NTclustered gi|2445365262|ref|XM_003113149.2| 31234 g34866 i0 81.481 5.14545454545455 135 25 82 0 18 152 410 276 Caenorhabditis remanei uncharacterized protein (GCK72_009834), partial mRNA blastn 849 111 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10574852 10574852 PRJNA274362_S_NODE_37969_length_159_cov_2.727273_g37849_i0 PRJNA274362 37969 159 2.727273 4.33636407 Caenorhabditis briggsae 6238 Nematoda Nematoda 110 7.7e-20   NTclustered gi|268531565|ref|XM_002630863.1| 6238 g37849 i0 82.171 3.73584905660377 129 21 81 2 30 157 275 148 Caenorhabditis briggsae Protein CBR-LGG-1 (Cbr-lgg-1), partial mRNA blastn 594 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
13124434 13124434 PRJNA274362_S_NODE_25351_length_187_cov_1.297101_g25231_i0 PRJNA274362 25351 187 1.297101 2.42557887 Rhabditida 6236 Nematoda Nematoda 100 5.88e-25   NR KHN80928.1 6265 g25231 i0 74.2 5.90374331550802 62 16 99.5 0 186 1 40 101 KHN80928.1 60S ribosomal protein L23a [Toxocara canis] diamond 1104 101 0.99009900990099 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
15673616 15673616 PRJNA274362_S_NODE_633_length_901_cov_2.893192_g569_i0 PRJNA274362 633 901 2.893192 26.06765992 Heterodera glycines 51029 Nematoda Nematoda 331 5.499999999999998e-111   NR CAA74205.1 51029 g569 i0 70 0.822419533851276 247 73 82.2 1 888 148 1 246 CAA74205.1 serine proteinase [Heterodera glycines] diamond 741 331 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Heterodera Heterodera glycines
18222126 18222126 PRJNA274362_S_NODE_18015_length_215_cov_1.240964_g17895_i0 PRJNA274362 18015 215 1.240964 2.6680726 Pristionchus sp. 10 RS5133 452805 Nematoda Nematoda 62.1 3.15e-5   NTclustered gi|150984447|gb|EF634866.1| 452805 g17895 i0 85.965 0.265116279069767 57 8 27 0 3 59 541 597 Pristionchus sp. 10 RS5133 small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 57 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 10 RS5133
18222256 18222256 PRJNA274362_S_NODE_24055_length_191_cov_1.443662_g23935_i0 PRJNA274362 24055 191 1.443662 2.75739442 Pristionchus bucculentus 1317126 Nematoda Nematoda 106 1.24e-18   NTclustered gi|479330840|gb|KC463841.1| 1317126 g23935 i0 82.114 2.59162303664921 123 22 64 0 2 124 150 28 Pristionchus bucculentus strain RS5596 large subunit ribosomal protein 27a (rpl27a) gene, partial cds blastn 495 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus bucculentus
22046822 22046822 PRJNA274362_S_NODE_10958_length_265_cov_1.166667_g10838_i0 PRJNA274362 10958 265 1.166667 3.09166755 Caenorhabditis elegans 6239 Nematoda Nematoda 228 3.7499999999999994e-55   NTclustered gi|687865697|emb|LK927572.1| 6239 g10838 i0 82.197 195.803773584906 264 47 99 0 2 265 119817 120080 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000039 blastn 51888 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
23322850 23322850 PRJNA274362_S_NODE_36359_length_163_cov_1.368421_g36239_i0 PRJNA274362 36359 163 1.368421 2.23052623 Opisthokonta 33154 Nematoda Nematoda 102 1.82e-24   NR CAD5212871.1 465554 g36239 i0 88.7 18.478527607362 53 6 97.5 0 161 3 122 174 CAD5212871.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 3012 102 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
27042461 27042461 PRJNA274362_S_NODE_28702_length_177_cov_1.218750_g28582_i0 PRJNA274362 28702 177 1.21875 2.1571875 Brugia malayi 6279 Nematoda Nematoda 61.6 2.56e-9   NR CDQ06246.1 6279 g28582 i0 65 5.55932203389831 40 14 67.8 0 121 2 173 212 CDQ06246.1 Bm7681 [Brugia malayi] diamond 984 61.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Brugia Brugia malayi
27313247 27313247 PRJNA274362_S_NODE_27583_length_180_cov_1.541985_g27463_i0 PRJNA274362 27583 180 1.541985 2.775573 Metazoa 33208 Nematoda Nematoda 83.2 3.5e-18   NR KJH46816.1 29172 g27463 i0 76.5 11.7166666666667 51 12 85 0 155 3 36 86 KJH46816.1 ribosomal protein L14p/L23e [Dictyocaulus viviparus] diamond 2109 83.6 0.995215311004785 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Metastrongylidae Dictyocaulus Dictyocaulus viviparus
27737769 27737769 PRJNA274362_S_NODE_25964_length_185_cov_1.455882_g25844_i0 PRJNA274362 25964 185 1.455882 2.6933817 Bursaphelenchus okinawaensis 465554 Nematoda Nematoda 61.2 2.05e-9   NR CAD5217367.1 465554 g25844 i0 56.6 1.88108108108108 53 19 85.9 1 2 160 25 73 CAD5217367.1 unnamed protein product [Bursaphelenchus okinawaensis] diamond 348 61.2 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus okinawaensis
29049821 29049821 PRJNA274362_S_NODE_30368_length_173_cov_0.975806_g30248_i0 PRJNA274362 30368 173 0.975806 1.68814438 Rhabditida 6236 Nematoda Nematoda 52.4 1.12e-6   NR CAD5234496.1 6326 g30248 i0 48.3 4.04046242774566 60 27 97.1 1 169 2 16 75 CAD5234496.1 unnamed protein product [Bursaphelenchus xylophilus] diamond 699 52.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
29428326 29428326 PRJNA274362_S_NODE_16249_length_224_cov_1.720000_g16129_i0 PRJNA274362 16249 224 1.72 3.8528 Metazoa 33208 Nematoda Nematoda 55.1 5.53e-8   NR VDK79327.1 637853 g16129 i0 80 3.61607142857143 30 6 40.2 0 2 91 41 70 VDK79327.1 unnamed protein product [Gongylonema pulchrum] diamond 810 55.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
29631598 29631598 PRJNA274362_S_NODE_22130_length_198_cov_1.046980_g22010_i0 PRJNA274362 22130 198 1.04698 2.0730204 Mesorhabditis spiculigera 96644 Nematoda Nematoda 65.9 1.51e-10   NR CAJ0578448.1 96644 g22010 i0 62.9 1.87878787878788 62 23 93.9 0 195 10 2365 2426 CAJ0578448.1 unnamed protein product, partial [Mesorhabditis spiculigera] diamond 372 65.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Mesorhabditis Mesorhabditis spiculigera
29821090 29821090 PRJNA274362_S_NODE_35291_length_165_cov_0.879310_g35171_i0 PRJNA274362 35291 165 0.87931 1.4508615 Soboliphyme baturini 241478 Nematoda Nematoda 71.6 5.95e-14   NR VDP39418.1 241478 g35171 i0 73.6 0.963636363636364 53 12 96.4 1 3 161 23 73 VDP39418.1 unnamed protein product [Soboliphyme baturini] diamond 159 71.6 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
30042433 30042433 PRJNA274362_S_NODE_19551_length_208_cov_1.264151_g19431_i0 PRJNA274362 19551 208 1.264151 2.62943408 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 42.4 0.0173   NR CAD6187414.1 2777116 g19431 i0 67.9 1.93269230769231 28 9 40.4 0 69 152 19 46 CAD6187414.1 unnamed protein product [Caenorhabditis auriculariae] diamond 402 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
30502551 30502551 PRJNA274362_S_NODE_31133_length_171_cov_1.131148_g31013_i0 PRJNA274362 31133 171 1.131148 1.93426308 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 64.7 1.18e-11   NR KAH7719822.1 70226 g31013 i0 72.7 14.859649122807 44 12 77.2 0 133 2 4 47 KAH7719822.1 60S ribosomal protein L30 [Aphelenchoides avenae] diamond 2541 65.1 0.993855606758833 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
30723612 30723612 PRJNA274362_S_NODE_19174_length_210_cov_0.906832_g19054_i0 PRJNA274362 19174 210 0.906832 1.9043472 Opisthokonta 33154 Nematoda Nematoda 42.4 0.0341   NR EGT51786.1 135651 g19054 i0 38.5 3.54285714285714 52 22 60 1 79 204 291 342 EGT51786.1 hypothetical protein CAEBREN_02681 [Caenorhabditis brenneri] diamond 744 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
30976581 30976581 PRJNA274362_S_NODE_13694_length_241_cov_1.250000_g13574_i0 PRJNA274362 13694 241 1.25 3.0125 Steinernema 34507 Nematoda Nematoda 93.6 1.72e-21   NR TKR81205.1 34508 g13574 i0 62.5 2.67634854771784 72 27 89.6 0 1 216 136 207 TKR81205.1 hypothetical protein L596_015117 [Steinernema carpocapsae] diamond 645 93.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
31147888 31147888 PRJNA274362_S_NODE_31095_length_171_cov_1.237705_g30975_i0 PRJNA274362 31095 171 1.237705 2.11647555 Caenorhabditis auriculariae 2777116 Nematoda Nematoda 42.4 0.0109   NR CAD6187414.1 2777116 g30975 i0 72.4 1.08771929824561 29 8 50.9 0 128 42 19 47 CAD6187414.1 unnamed protein product [Caenorhabditis auriculariae] diamond 186 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis auriculariae
31527905 31527905 PRJNA274362_S_NODE_28376_length_178_cov_1.186047_g28256_i0 PRJNA274362 28376 178 1.186047 2.11116366 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 67.8 2.29e-11   NR KAI6170541.1 293665 g28256 i0 48.3 2.35955056179775 58 30 97.8 0 175 2 249 306 KAI6170541.1 4-aminobutyrate aminotransferase, mitochondrial [Aphelenchoides bicaudatus] diamond 420 67.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;