RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA274362", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA274362 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11849197 11849197 PRJNA274362_S_NODE_23770_length_192_cov_1.328671_g23650_i0 PRJNA274362 23770 192 1.328671 2.55104832 root 1 Root_unresolved Root_unresolved 117 3.2599999999999992e-31   NR AAC33578.1 5722 g23650 i0 81 22.640625 63 12 98.4 0 190 2 20 82 AAC33578.1 cytosolic heat shock protein 70, partial [Trichomonas vaginalis] diamond 4347 118 0.991525423728814 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27769268 27769268 PRJNA274362_S_NODE_34764_length_165_cov_1.344828_g34644_i0 PRJNA274362 34764 165 1.344828 2.2189662 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 67.4 5.79e-12   NR XP_001326525.1 412133 g34644 i0 57.4 2.94545454545455 54 23 98.2 0 163 2 30 83 XP_001326525.1 universal ribosomal protein uL13 family [Trichomonas vaginalis G3] diamond 486 67.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28905449 28905449 PRJNA274362_S_NODE_32808_length_168_cov_0.873950_g32688_i0 PRJNA274362 32808 168 0.87395 1.468236 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 64.3 3.25e-10   NR XP_068367258.1 1144522 g32688 i0 59.6 0.928571428571429 52 21 92.9 0 9 164 1241 1292 XP_068367258.1 aldehyde oxidase and xanthine dehydrogenase [Tritrichomonas foetus] diamond 156 64.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;