RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA274362", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA274362 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1645446 1645446 PRJNA274362_S_NODE_28082_length_179_cov_1.107692_g27962_i0 PRJNA274362 28082 179 1.107692 1.98276868 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 102 3.19e-25   NR TNJ27353.1 5742 g27962 i0 74.6 16.7430167597765 59 15 98.9 0 3 179 6 64 TNJ27353.1 Ribosomal protein L10 [Giardia muris] diamond 2997 102 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris
31243050 31243050 PRJNA274362_S_NODE_18715_length_212_cov_0.914110_g18595_i0 PRJNA274362 18715 212 0.91411 1.9379132 Spironucleus salmonicida 348837 Fornicata other_Eukaryota 109 1.61e-28   NR XP_067763597.1 348837 g18595 i0 68.6 0.990566037735849 70 22 99.1 0 3 212 29 98 XP_067763597.1 Nucleoside diphosphate kinase [Spironucleus salmonicida] diamond 210 109 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Spironucleus Spironucleus salmonicida
31527906 31527906 PRJNA274362_S_NODE_31716_length_169_cov_1.625000_g31596_i0 PRJNA274362 31716 169 1.625 2.74625 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 80.1 3.27e-16   NR KAG9391051.1 201153 g31596 i0 66.7 0.958579881656805 54 18 95.9 0 167 6 172 225 KAG9391051.1 Ribosomal protein L18/L5 [Carpediemonas membranifera] diamond 162 80.1 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;