RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA274362", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA274362 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9298607 9298607 PRJNA274362_S_NODE_23008_length_195_cov_0.952055_g22888_i0 PRJNA274362 23008 195 0.952055 1.85650725 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 283 5.49e-72   NTclustered gi|2874253728|emb|OY969570.1| 412054 g22888 i0 92.857 57.3333333333333 196 12 100 2 1 195 172916 172722 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 11180 283 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22047020 22047020 PRJNA274362_S_NODE_21258_length_201_cov_1.355263_g21138_i0 PRJNA274362 21258 201 1.355263 2.72407863 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 219 1.6299999999999999e-52   NTclustered gi|2874253978|emb|OY970303.1| 412054 g21138 i0 86.5 87.910447761194 200 25 99 2 1 199 1904510 1904708 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 17670 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
32192227 32192227 PRJNA274362_S_NODE_33638_length_167_cov_0.881356_g33518_i0 PRJNA274362 33638 167 0.881356 1.47186452 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.5 0.00644   NR MBI4539274.1 2026742 g33518 i0 44.4 0.970059880239521 54 25 88 2 150 4 62 115 MBI4539274.1 adenylate kinase [Gemmatimonadota bacterium] diamond 162 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;