RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA270367" and tax_phylum = "Balneolota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Balneolota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA270367 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6747693 6747693 PRJNA270367_P_NODE_24546_length_233_cov_1.097826_g24341_i0 PRJNA270367 24546 233 1.097826 2.55793458 Pseudomonadati 3379134 Bacteria Bacteria 155 3.0399999999999993e-46   NR NIT58457.1 1872440 g24341 i0 96.1 1.98283261802575 77 3 99.1 0 3 233 39 115 NIT58457.1 leucine--tRNA ligase [Fodinibius sp.] diamond 462 155 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius sp.
28084652 28084652 PRJNA270367_P_NODE_32305_length_194_cov_1.075862_g32100_i0 PRJNA270367 32305 194 1.075862 2.08717228 Fodinibius sp. 1872440 Bacteria Bacteria 82.8 2.59e-19   NR NIT59054.1 1872440 g32100 i0 97.4 0.603092783505155 39 1 60.3 0 1 117 14 52 NIT59054.1 hypothetical protein [Fodinibius sp.] diamond 117 82.8 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius sp.
28481376 28481376 PRJNA270367_P_NODE_18866_length_281_cov_1.344828_g18661_i0 PRJNA270367 18866 281 1.344828 3.77896668 Bacteria 2 Bacteria Bacteria 100 1.92e-22   NR WP_114985733.1 1457365 g18661 i0 64.5 9.86476868327402 76 25 79 1 1 222 385 460 WP_114985733.1 3-deoxy-7-phosphoheptulonate synthase class II [Cyclonatronum proteinivorum] diamond 2772 101 0.99009900990099 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Cyclonatronaceae Cyclonatronum Cyclonatronum proteinivorum
28765418 28765418 PRJNA270367_P_NODE_38407_length_172_cov_1.268293_g38202_i0 PRJNA270367 38407 172 1.268293 2.18146396 Pseudomonadati 3379134 Bacteria Bacteria 114 1.79e-29   NR NIV16804.1 1872440 g38202 i0 96.5 1.98837209302326 57 2 99.4 0 2 172 83 139 NIV16804.1 peptidylprolyl isomerase [Fodinibius sp.] diamond 342 114 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius sp.
29459839 29459839 PRJNA270367_P_NODE_43630_length_165_cov_0.896552_g43425_i0 PRJNA270367 43630 165 0.896552 1.4793108 Pseudomonadati 3379134 Bacteria Bacteria 105 1.24e-27   NR NIV15342.1 1872440 g43425 i0 100 2.94545454545455 54 0 98.2 0 3 164 38 91 NIV15342.1 TonB-dependent receptor [Fodinibius sp.] diamond 486 105 1 Bacteria FCB group Pseudomonadati Balneolota Balneolia Balneolales Balneolaceae Fodinibius Fodinibius sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;