RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA270367", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA270367 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16947400 16947400 PRJNA270367_P_NODE_29934_length_204_cov_1.161290_g29729_i0 PRJNA270367 29934 204 1.16129 2.3690316 uncultured delta proteobacterium 34034 Bacteria Bacteria 158 3.67e-34   NTclustered gi|374854163|dbj|AP011765.1| 34034 g29729 i0 80.976 296.156862745098 205 34 99 4 1 203 15068 14867 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 60416 158 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
29158452 29158452 PRJNA270367_P_NODE_27529_length_216_cov_0.844311_g27324_i0 PRJNA270367 27529 216 0.844311 1.82371176 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 58.9 5.32e-8   NR PIR26036.1 1973973 g27324 i0 36.1 4.84722222222222 72 46 100 0 216 1 828 899 PIR26036.1 MAG: isoleucine--tRNA ligase [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_23] diamond 1047 58.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_23
30091570 30091570 PRJNA270367_P_NODE_42552_length_166_cov_0.888889_g42347_i0 PRJNA270367 42552 166 0.888889 1.47555574 Myxococcota 2818505 Bacteria Bacteria 47 4.22e-4   NR OGQ09290.1 1797848 g42347 i0 40 2.71084337349398 50 30 90.4 0 16 165 28 77 OGQ09290.1 MAG: hypothetical protein A2138_01530 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 450 47 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;