RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where bioproject = "PRJNA270367", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 29 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 29 ✖

bioproject 1

  • PRJNA270367 · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6747567 6747567 PRJNA270367_P_NODE_12246_length_376_cov_1.159021_g12044_i0 PRJNA270367 12246 376 1.159021 4.35791896 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 54.7 0.01   NTclustered gi|2874253690|emb|OY969416.1| 412056 g12044 i0 100 0.236702127659574 29 0 8 0 294 322 897962 897990 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 89 54.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
8023261 8023261 PRJNA270367_P_NODE_13647_length_352_cov_1.372937_g13442_i0 PRJNA270367 13647 352 1.372937 4.83273824 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 187 8.7e-55   NR HEX7862861.1 2499141 g13442 i0 76.1 6.89488636363636 117 28 99.7 0 351 1 256 372 HEX7862861.1 adenosylhomocysteinase [Verrucomicrobiia bacterium] diamond 2427 187 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
14399102 14399102 PRJNA270367_P_NODE_34872_length_184_cov_1.540741_g34667_i0 PRJNA270367 34872 184 1.540741 2.83496344 Bacteria 2 Bacteria Bacteria 86.7 4.9e-18   NR OUU24720.1 1986791 g34667 i0 67.2 12.7336956521739 61 20 99.5 0 1 183 292 352 OUU24720.1 MAG: UDP-glucose 6-dehydrogenase [Verrucomicrobia bacterium TMED44] diamond 2343 87.4 0.991990846681922 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium TMED44
22046502 22046502 PRJNA270367_P_NODE_21358_length_257_cov_1.009615_g21153_i0 PRJNA270367 21358 257 1.009615 2.59471055 Congregicoccus parvus 3081749 Bacteria Bacteria 233 7.78e-57   NTclustered gi|2599616993|dbj|AP028972.1| 3081749 g21153 i0 83.137 84.4669260700389 255 43 99 0 1 255 2535857 2535603 Opitutales bacterium ASA1 DNA, complete genome blastn 21708 233 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Alterococcaceae Congregicoccus Congregicoccus parvus
26979087 26979087 PRJNA270367_P_NODE_34402_length_186_cov_1.138686_g34197_i0 PRJNA270367 34402 186 1.138686 2.11795596 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 83.6 4.94e-19   NR RYD73501.1 2026800 g34197 i0 86.8 0.854838709677419 53 7 85.5 0 160 2 4 56 RYD73501.1 MAG: fructose-bisphosphate aldolase class I [Verrucomicrobiaceae bacterium] diamond 159 83.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27028523 27028523 PRJNA270367_P_NODE_41442_length_167_cov_0.881356_g41237_i0 PRJNA270367 41442 167 0.881356 1.47186452 root 1 Root_unresolved Root_unresolved 48.5 1.1e-4   NR MEQ9824446.1 2026784 g41237 i0 56.8 4.05988023952096 37 16 66.5 0 5 115 77 113 MEQ9824446.1 FkbM family methyltransferase [Puniceicoccaceae bacterium] diamond 678 48.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Puniceicoccaceae   Puniceicoccaceae bacterium
27516412 27516412 PRJNA270367_P_NODE_38303_length_172_cov_1.691057_g38098_i0 PRJNA270367 38303 172 1.691057 2.90861804 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42 0.0263   NR MBI5771067.1 2026799 g38098 i0 47.4 0.662790697674419 38 20 66.3 0 146 33 395 432 MBI5771067.1 PQQ-dependent sugar dehydrogenase [Verrucomicrobiota bacterium] diamond 114 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27565532 27565532 PRJNA270367_P_NODE_34984_length_184_cov_1.155556_g34779_i0 PRJNA270367 34984 184 1.155556 2.12622304 Bacteria 2 Bacteria Bacteria 51.6 1.29e-5   NR HEV2840315.1 2201154 g34779 i0 42.6 1.59782608695652 54 31 88 0 171 10 1324 1377 HEV2840315.1 cadherin-like domain-containing protein [Chthoniobacterales bacterium] diamond 294 51.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
27597434 27597434 PRJNA270367_P_NODE_42784_length_166_cov_0.888889_g42579_i0 PRJNA270367 42784 166 0.888889 1.47555574 Pseudomonadati 3379134 Bacteria Bacteria 45.8 0.0011   NR MBU4199594.1 2026799 g42579 i0 45 3.57831325301205 40 22 72.3 0 120 1 1994 2033 MBU4199594.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 594 45.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27800715 27800715 PRJNA270367_P_NODE_19024_length_279_cov_1.839130_g18819_i0 PRJNA270367 19024 279 1.83913 5.1311727 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 86.3 6.68e-20   NR MCX6971451.1 2026799 g18819 i0 72.5 0.548387096774194 51 14 54.8 0 66 218 3 53 MCX6971451.1 CDGSH iron-sulfur domain-containing protein [Verrucomicrobiota bacterium] diamond 153 86.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28084648 28084648 PRJNA270367_P_NODE_27705_length_215_cov_1.066265_g27500_i0 PRJNA270367 27705 215 1.066265 2.29246975 Lacunisphaera sp. 1961806 Bacteria Bacteria 42 0.0496   NR HKB57398.1 1961806 g27500 i0 51.4 0.488372093023256 35 17 48.8 0 195 91 642 676 HKB57398.1 VCBS repeat-containing protein [Lacunisphaera sp.] diamond 105 42 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera sp.
28323336 28323336 PRJNA270367_P_NODE_45386_length_163_cov_0.912281_g45181_i0 PRJNA270367 45386 163 0.912281 1.48701803 Bacteria 2 Bacteria Bacteria 44.3 0.00159   NR MEQ9823101.1 2026784 g45181 i0 36.2 3.20245398773006 58 32 97.5 1 161 3 78 135 MEQ9823101.1 low molecular weight phosphatase family protein [Puniceicoccaceae bacterium] diamond 522 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales Puniceicoccaceae   Puniceicoccaceae bacterium
28463777 28463777 PRJNA270367_P_NODE_22066_length_251_cov_1.287129_g21861_i0 PRJNA270367 22066 251 1.287129 3.23069379 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47 0.00132   NR MDP9100463.1 2026799 g21861 i0 42.6 0.645418326693227 54 30 64.5 1 164 3 322 374 MDP9100463.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 162 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29063670 29063670 PRJNA270367_P_NODE_40608_length_168_cov_0.873950_g40403_i0 PRJNA270367 40608 168 0.87395 1.468236 Chthoniobacter sp. 2510640 Bacteria Bacteria 45.4 0.00154   NR MEI9893141.1 2510640 g40403 i0 91.3 0.410714285714286 23 2 41.1 0 72 4 1 23 MEI9893141.1 glutathione S-transferase C-terminal domain-containing protein [Chthoniobacter sp.] diamond 69 45.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae Chthoniobacter Chthoniobacter sp.
29126962 29126962 PRJNA270367_P_NODE_46829_length_162_cov_0.920354_g46624_i0 PRJNA270367 46829 162 0.920354 1.49097348 Prosthecobacter sp. 1965333 Bacteria Bacteria 47 3.93e-4   NR MEQ1750024.1 1965333 g46624 i0 43.6 1.01851851851852 55 28 96.3 1 6 161 56 110 MEQ1750024.1 immunoglobulin domain-containing protein [Prosthecobacter sp.] diamond 165 47 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
29554681 29554681 PRJNA270367_P_NODE_40470_length_168_cov_0.873950_g40265_i0 PRJNA270367 40470 168 0.87395 1.468236 Bacteria 2 Bacteria Bacteria 91.3 1.22e-20   NR HIL70672.1 2026799 g40265 i0 71.4 2 56 16 100 0 168 1 96 151 HIL70672.1 twin-arginine translocation signal domain-containing protein [Verrucomicrobiota bacterium] diamond 336 91.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29726324 29726324 PRJNA270367_P_NODE_37270_length_176_cov_0.826772_g37065_i0 PRJNA270367 37270 176 0.826772 1.45511872 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 41.2 0.0496   NR NUN94158.1 2499141 g37065 i0 33.3 1.78977272727273 60 36 95.5 2 176 9 100 159 NUN94158.1 D-2-hydroxyacid dehydrogenase [Verrucomicrobiia bacterium] diamond 315 41.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29726325 29726325 PRJNA270367_P_NODE_37910_length_173_cov_2.185484_g37705_i0 PRJNA270367 37910 173 2.185484 3.78088732 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 52.8 4.22e-6   NR MDA0814146.1 2026799 g37705 i0 54.9 4.52601156069364 51 19 81.5 2 171 31 803 853 MDA0814146.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 783 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30136853 30136853 PRJNA270367_P_NODE_33632_length_189_cov_1.114286_g33427_i0 PRJNA270367 33632 189 1.114286 2.10600054 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 82.8 4.06e-18   NR MAH13224.1 2026799 g33427 i0 66.7 0.857142857142857 54 18 85.7 0 5 166 107 160 MAH13224.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 162 82.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30154698 30154698 PRJNA270367_P_NODE_46132_length_162_cov_1.380531_g45927_i0 PRJNA270367 46132 162 1.380531 2.23646022 Pseudomonadati 3379134 Bacteria Bacteria 41.6 0.0333   NR MBL9159459.1 2026801 g45927 i0 31.9 1.51851851851852 47 32 87 0 162 22 552 598 MBL9159459.1 DUF1549 domain-containing protein [Verrucomicrobiales bacterium] diamond 246 41.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30168643 30168643 PRJNA270367_P_NODE_9392_length_436_cov_2.423773_g9191_i0 PRJNA270367 9392 436 2.423773 10.56765028 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 66.2 1.35e-9   NR HPA19960.1 2499141 g9191 i0 39.9 0.98394495412844 143 76 95 5 15 428 9 146 HPA19960.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 429 66.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
30705833 30705833 PRJNA270367_P_NODE_28514_length_211_cov_0.876543_g28309_i0 PRJNA270367 28514 211 0.876543 1.84950573 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 57 1.86e-7   NR MCC6231616.1 2026801 g28309 i0 43.9 1.67772511848341 66 34 89.6 1 20 208 110 175 MCC6231616.1 M48 family metallopeptidase [Verrucomicrobiales bacterium] diamond 354 57 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30832300 30832300 PRJNA270367_P_NODE_34074_length_187_cov_1.384058_g33869_i0 PRJNA270367 34074 187 1.384058 2.58818846 Puniceicoccales bacterium 2478473 Bacteria Bacteria 80.1 1.21e-15   NR MDR1498246.1 2478473 g33869 i0 66.1 2.8716577540107 59 20 94.7 0 186 10 409 467 MDR1498246.1 glycogen/starch/alpha-glucan phosphorylase [Puniceicoccales bacterium] diamond 537 80.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Puniceicoccales     Puniceicoccales bacterium
30863846 30863846 PRJNA270367_P_NODE_4814_length_624_cov_2.147826_g4625_i0 PRJNA270367 4814 624 2.147826 13.40243424 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 57 1.45e-5   NR KAB2645908.1 2026799 g4625 i0 44.9 0.735576923076923 69 37 33.2 1 3 209 57 124 KAB2645908.1 MAG: tandem-95 repeat protein, partial [Verrucomicrobiota bacterium] diamond 459 57 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31401478 31401478 PRJNA270367_P_NODE_42556_length_166_cov_0.888889_g42351_i0 PRJNA270367 42556 166 0.888889 1.47555574 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 55.8 3.18e-7   NR HWB04601.1 2026801 g42351 i0 50 1.01204819277108 56 26 97.6 1 162 1 2079 2134 HWB04601.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 168 55.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
31401480 31401480 PRJNA270367_P_NODE_45116_length_163_cov_1.368421_g44911_i0 PRJNA270367 45116 163 1.368421 2.23052623 Opitutaceae bacterium 2006848 Bacteria Bacteria 41.2 0.045   NR MBL9206387.1 2006848 g44911 i0 54 0.920245398773006 50 22 92 1 153 4 151 199 MBL9206387.1 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [Opitutaceae bacterium] diamond 150 41.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31938837 31938837 PRJNA270367_P_NODE_2337_length_911_cov_11.070766_g2169_i0 PRJNA270367 2337 911 11.070766 100.85467826 Luteolibacter sp. 1962973 Bacteria Bacteria 59.3 9.59e-6   NR WP_348214599.1 1962973 g2169 i0 27.2 0.678375411635565 206 126 65.2 10 264 857 318 507 WP_348214599.1 RICIN domain-containing protein [Luteolibacter sp.] diamond 618 59.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
32255790 32255790 PRJNA270367_P_NODE_30378_length_202_cov_1.228758_g30173_i0 PRJNA270367 30378 202 1.228758 2.48209116 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 83.2 8.69e-17   NR HUL51663.1 2499141 g30173 i0 64.1 2.83663366336634 64 23 95 0 11 202 88 151 HUL51663.1 multicopper oxidase domain-containing protein [Verrucomicrobiia bacterium] diamond 573 83.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
32634459 32634459 PRJNA270367_P_NODE_17240_length_299_cov_2.540000_g17035_i0 PRJNA270367 17240 299 2.54 7.5946 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 43.9 0.0279   NR HEY5813873.1 2832348 g17035 i0 33.3 0.662207357859532 66 37 59.2 1 92 268 100 165 HEY5813873.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 198 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;