RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA270367", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA270367 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15672695 15672695 PRJNA270367_P_NODE_24213_length_235_cov_1.231183_g24008_i0 PRJNA270367 24213 235 1.231183 2.89328005 root 1 Root_unresolved Root_unresolved 111 1.93e-26   NR MDD5347065.1 2035772 g24008 i0 76.6 7.92765957446808 77 18 98.3 0 5 235 655 731 MDD5347065.1 heavy metal translocating P-type ATPase [Candidatus Omnitrophota bacterium] diamond 1863 111 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30579330 30579330 PRJNA270367_P_NODE_44173_length_164_cov_1.356522_g43968_i0 PRJNA270367 44173 164 1.356522 2.22469608 Candidatus Omnitrophica bacterium CG 2035772 Bacteria Bacteria 60.1 9.6e-9   NR PIU40721.1 1974742 g43968 i0 74.2 7.15243902439024 31 8 56.7 0 40 132 189 219 PIU40721.1 MAG: hypothetical protein COT00_00195 [Candidatus Omnitrophica bacterium CG07_land_8_20_14_0_80_50_8] diamond 1173 60.1 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophica bacterium CG07_land_8_20_14_0_80_50_8
30611038 30611038 PRJNA270367_P_NODE_28473_length_211_cov_1.265432_g28268_i0 PRJNA270367 28473 211 1.265432 2.67006152 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47 7.51e-4   NR MCD4778959.1 2035772 g28268 i0 35.5 1.54976303317536 62 36 82.5 2 24 197 23 84 MCD4778959.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 327 47 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;