RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA270367", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA270367 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30990452 30990452 PRJNA270367_P_NODE_1694_length_1077_cov_4.409533_g1541_i0 PRJNA270367 1694 1077 4.409533 47.49067041 Pyranulibacter aquaticus 3163344 Bacteria Bacteria 94.7 5.6e-17   NR MFA3783372.1 3163344 g1541 i0 29 0.757660167130919 272 157 74.4 10 49 849 1132 1372 MFA3783372.1 choice-of-anchor A family protein [Melioribacteraceae bacterium 4301-Me] diamond 816 94.7 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae Pyranulibacter Pyranulibacter aquaticus
32241793 32241793 PRJNA270367_P_NODE_19818_length_272_cov_0.932735_g19613_i0 PRJNA270367 19818 272 0.932735 2.5370392 Bacteria 2 Bacteria Bacteria 176 1.92e-50   NR MDP2302298.1 2053306 g19613 i0 86.7 1.98529411764706 90 12 99.3 0 1 270 152 241 MDP2302298.1 site-specific DNA-methyltransferase [Ignavibacteria bacterium] diamond 540 176 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;