RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA270367", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA270367 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11848563 11848563 PRJNA270367_P_NODE_19590_length_274_cov_0.920000_g19385_i0 PRJNA270367 19590 274 0.92 2.5208 Copromyxa protea 931554 Tubulinea other_Eukaryota 116 3.03e-28   NR BAN33737.1 931554 g19385 i0 76 12.3175182481752 75 18 82.1 0 49 273 4 78 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 3375 116 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
14398969 14398969 PRJNA270367_P_NODE_2132_length_954_cov_11.615470_g1969_i0 PRJNA270367 2132 954 11.61547 110.8115838 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 283 6.929999999999999e-92   NR AAY21191.1 5778 g1969 i0 63.6 0.742138364779874 236 85 74.2 1 122 829 12 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 708 283 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14399023 14399023 PRJNA270367_P_NODE_26352_length_222_cov_1.306358_g26147_i0 PRJNA270367 26352 222 1.306358 2.90011476 Amoeba proteus 5775 Tubulinea other_Eukaryota 224 3.94e-54   NTclustered gi|844573744|gb|KP411223.1| 5775 g26147 i0 85 0.990990990990991 220 33 99 0 2 221 743 524 Amoeba proteus Tom40 mRNA, complete cds blastn 220 224 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
16947642 16947642 PRJNA270367_P_NODE_9534_length_432_cov_2.595300_g9333_i0 PRJNA270367 9534 432 2.5953 11.211696 Amoeba proteus 5775 Tubulinea other_Eukaryota 398 4.649999999999998e-106   NTclustered gi|844573744|gb|KP411223.1| 5775 g9333 i0 83.953 0.99537037037037 430 54 97 13 11 431 14 437 Amoeba proteus Tom40 mRNA, complete cds blastn 430 398 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27042458 27042458 PRJNA270367_P_NODE_8062_length_474_cov_3.094118_g7864_i0 PRJNA270367 8062 474 3.094118 14.66611932 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 169 8.89e-51   NR ABD72565.1 5778 g7864 i0 63 0.80379746835443 127 45 80.4 1 18 398 13 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 381 169 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27105473 27105473 PRJNA270367_P_NODE_8102_length_473_cov_1.865566_g7904_i0 PRJNA270367 8102 473 1.865566 8.82412718 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 154 7.51e-45   NR ABD72565.1 5778 g7904 i0 65.7 0.684989429175476 108 37 68.5 0 149 472 1 108 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 324 154 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27136814 27136814 PRJNA270367_P_NODE_18662_length_283_cov_1.551282_g18457_i0 PRJNA270367 18662 283 1.551282 4.39012806 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 58.2 1.44e-8   NR AKT93972.1 5778 g18457 i0 43.2 0.858657243816254 81 46 85.9 0 269 27 21 101 AKT93972.1 ribosomal protein L19 [Vermamoeba vermiformis] diamond 243 58.2 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
27358679 27358679 PRJNA270367_P_NODE_21983_length_252_cov_0.866995_g21778_i0 PRJNA270367 21983 252 0.866995 2.1848274 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 90.5 3.17e-20   NR ABD46545.1 5778 g21778 i0 50.6 0.964285714285714 81 40 96.4 0 251 9 11 91 ABD46545.1 aldehyde dehydrogenase, partial [Vermamoeba vermiformis] diamond 243 90.5 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29379289 29379289 PRJNA270367_P_NODE_2889_length_815_cov_2.156658_g2713_i0 PRJNA270367 2889 815 2.156658 17.5767627 Amoeba proteus 5775 Tubulinea other_Eukaryota 59.3 3.31e-6   NR AKN09692.1 5775 g2713 i0 27.2 0.63680981595092 173 119 61.8 3 798 295 3 173 AKN09692.1 Tom40 [Amoeba proteus] diamond 519 59.3 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
31559615 31559615 PRJNA270367_P_NODE_39996_length_169_cov_0.866667_g39791_i0 PRJNA270367 39996 169 0.866667 1.46466723 Amoeba proteus 5775 Tubulinea other_Eukaryota 51.2 1.34e-5   NR AAD37351.1 5775 g39791 i0 52.9 0.905325443786982 51 24 90.5 0 167 15 16 66 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 153 51.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;