RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA263496", tax_phylum = "Bdellovibrionota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bdellovibrionota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA263496 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26965149 26965149 PRJNA263496_P_NODE_3002_length_514_cov_2.316129_g2755_i0 PRJNA263496 3002 514 2.316129 11.90490306 Pseudomonadati 3379134 Bacteria Bacteria 192 2.8000000000000002e-59   NR OFY98889.1 1797385 g2755 i0 70.2 4.13229571984436 141 42 82.3 0 424 2 1 141 OFY98889.1 MAG: rubrerythrin [Bdellovibrionales bacterium GWB1_52_6] diamond 2124 192 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium GWB1_52_6
27976094 27976094 PRJNA263496_P_NODE_25125_length_162_cov_0.902655_g24872_i0 PRJNA263496 25125 162 0.902655 1.4623011 Bdellovibrio 958 Bacteria Bacteria 58.2 1.26e-8   NR OYZ23896.1 1970323 g24872 i0 57.8 4.40740740740741 45 19 83.3 0 155 21 111 155 OYZ23896.1 MAG: crossover junction endodeoxyribonuclease RuvC [Bdellovibrio sp. 28-41-41] diamond 714 58.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. 28-41-41

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;