RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA263496" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA263496 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10573608 10573608 PRJNA263496_P_NODE_7169_length_302_cov_2.936759_g6916_i0 PRJNA263496 7169 302 2.936759 8.86901218 uncultured Poseidoniia archaeon 1697135 Archaea Archaea 52.8 0.028   NTclustered gi|730903793|gb|KP211874.1| 1697135 g6916 i0 100 0.0927152317880795 28 0 9 0 226 253 17130 17103 Uncultured Candidatus Thalassoarchaea euryarchaeote clone MedDCM-OCT2007-C2085 genomic sequence blastn 28 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia       uncultured Poseidoniia archaeon
28734016 28734016 PRJNA263496_P_NODE_19027_length_177_cov_3.187500_g18774_i0 PRJNA263496 19027 177 3.1875 5.641875 Archaea 2157 Archaea Archaea 87.4 2.46e-18   NR HIQ10235.1 2026739 g18774 i0 69.6 4.6271186440678 56 17 94.9 0 3 170 320 375 HIQ10235.1 proline--tRNA ligase [Methanobacteriota archaeon] diamond 819 87.4 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;