RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA263496", tax_kingdom = "Fungi" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

  • Fungi · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA263496 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13123121 13123121 PRJNA263496_P_NODE_21211_length_167_cov_0.864407_g20958_i0 PRJNA263496 21211 167 0.864407 1.44355969 Quaeritorhizaceae 2728522 Fungi Fungi 97.4 9.15e-23   NR OAJ42863.1 403673 g20958 i0 78.2 27.6646706586826 55 12 98.8 0 167 3 132 186 OAJ42863.1 40S ribosomal protein S4 [Batrachochytrium dendrobatidis JEL423] diamond 4620 97.8 0.995910020449898 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
27516394 27516394 PRJNA263496_P_NODE_4103_length_424_cov_1.898667_g3850_i0 PRJNA263496 4103 424 1.898667 8.05034808 Rhizoclosmatium globosum 329046 Fungi Fungi 44.7 0.043   NR ORY50952.1 329046 g3850 i0 39.5 0.57311320754717 81 41 53.8 2 61 288 197 274 ORY50952.1 hypothetical protein BCR33DRAFT_498941 [Rhizoclosmatium globosum] diamond 243 44.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Rhizoclosmatium Rhizoclosmatium globosum
28053064 28053064 PRJNA263496_P_NODE_21105_length_167_cov_0.864407_g20852_i0 PRJNA263496 21105 167 0.864407 1.44355969 Phlyctochytrium bullatum 1352834 Fungi Fungi 44.7 0.00277   NR KAJ3116521.1 1352834 g20852 i0 47.1 2.78443113772455 51 27 91.6 0 157 5 287 337 KAJ3116521.1 hypothetical protein HDU96_009507 [Phlyctochytrium bullatum] diamond 465 44.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium bullatum
29933978 29933978 PRJNA263496_P_NODE_21071_length_167_cov_0.864407_g20818_i0 PRJNA263496 21071 167 0.864407 1.44355969 Chytridiomycetes 451435 Fungi Fungi 52 3.63e-6   NR KAI8928255.1 281842 g20818 i0 49.1 4.90419161676647 55 28 98.8 0 2 166 101 155 KAI8928255.1 ribosomal protein L6, alpha-beta domain-containing protein [Entophlyctis helioformis] diamond 819 52 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Entophlyctis Entophlyctis helioformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;