RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA263496", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA263496 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24009167 24009167 PRJNA263496_P_NODE_18859_length_178_cov_2.767442_g18606_i0 PRJNA263496 18859 178 2.767442 4.92604676 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89.7 4.39e-19   NR CDW80370.1 5949 g18606 i0 70.7 15.8595505617978 58 17 97.8 0 5 178 788 845 CDW80370.1 elongation factor domain iv family protein [Stylonychia lemnae] diamond 2823 90.5 0.991160220994475 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Oxytrichidae Stylonychia Stylonychia lemnae
29965474 29965474 PRJNA263496_P_NODE_12911_length_218_cov_1.207101_g12658_i0 PRJNA263496 12911 218 1.207101 2.63148018 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 83.2 8.84e-17   NR XP_001425443.1 5888 g12658 i0 60.9 11.3669724770642 64 24 88.1 1 5 196 167 229 XP_001425443.1 uncharacterized protein GSPATT00029080001 [Paramecium tetraurelia] diamond 2478 84 0.990476190476191 Eukaryota Sar   Ciliophora Oligohymenophorea Peniculida Parameciidae Paramecium Paramecium tetraurelia
30376552 30376552 PRJNA263496_P_NODE_21032_length_167_cov_1.118644_g20779_i0 PRJNA263496 21032 167 1.118644 1.86813548 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 44.3 0.0038   NR TNV86175.1 5974 g20779 i0 46 13.3652694610778 50 25 86.2 2 7 150 73 122 TNV86175.1 hypothetical protein FGO68_gene11281 [Halteria grandinella] diamond 2232 44.3 1 Eukaryota Sar   Ciliophora Spirotrichea Sporadotrichida Halteriidae Halteria Halteria grandinella

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;