RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA263496" and tax_clade = "Amoebozoa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA263496 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6746982 6746982 PRJNA263496_P_NODE_18966_length_178_cov_1.186047_g18713_i0 PRJNA263496 18966 178 1.186047 2.11116366 Endolimax piscium 1284676 Evosea other_Eukaryota 150 5.19e-32   NTclustered gi|443299289|gb|JX101954.1| 1284676 g18713 i0 83.237 3.94943820224719 173 20 93 7 13 178 1900 2070 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 703 150 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
9297365 9297365 PRJNA263496_P_NODE_21008_length_167_cov_1.296610_g20755_i0 PRJNA263496 21008 167 1.29661 2.1653387 root 1 Root_unresolved Root_unresolved 95.1 4.72e-21   NR AAN33185.1 108607 g20755 i0 87.3 31.6167664670659 55 7 98.8 0 165 1 109 163 AAN33185.1 putative pyruvate phosphate dikinase [Mastigamoeba balamuthi] diamond 5280 95.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Mastigamoebidae Mastigamoeba Mastigamoeba balamuthi
15672028 15672028 PRJNA263496_P_NODE_20453_length_170_cov_1.264463_g20200_i0 PRJNA263496 20453 170 1.264463 2.1495871 Endolimax piscium 1284676 Evosea other_Eukaryota 182 1.74e-41   NTclustered gi|443299289|gb|JX101954.1| 1284676 g20200 i0 86.55 55.7117647058824 171 15 100 5 1 170 1753 1916 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 9471 182 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
15672056 15672056 PRJNA263496_P_NODE_21653_length_166_cov_1.307692_g21400_i0 PRJNA263496 21653 166 1.307692 2.17076872 Endolimax piscium 1284676 Evosea other_Eukaryota 233 4.63e-57   NTclustered gi|443299289|gb|JX101954.1| 1284676 g21400 i0 92.216 4.18674698795181 167 10 99 2 3 166 1337 1171 Endolimax piscium clone PM1 18S ribosomal RNA gene, partial sequence blastn 695 233 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Endolimax Endolimax piscium
18221182 18221182 PRJNA263496_P_NODE_5115_length_370_cov_1.757009_g4862_i0 PRJNA263496 5115 370 1.757009 6.5009333 Cavenderia fasciculata 261658 Evosea other_Eukaryota 52.8 0.035   NTclustered gi|470239771|ref|XM_004351803.1| 261658 g4862 i0 100 0.0756756756756757 28 0 8 0 59 86 497 524 Cavenderia fasciculata pleckstrin domain-containing protein (DFA_09959), partial mRNA blastn 28 52.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
29284340 29284340 PRJNA263496_P_NODE_22909_length_165_cov_0.879310_g22656_i0 PRJNA263496 22909 165 0.87931 1.4508615 Planoprotostelium fungivorum 1890364 Evosea other_Eukaryota 114 1.67e-28   NR PRP87642.1 1890364 g22656 i0 100 0.981818181818182 54 0 98.2 0 163 2 308 361 PRP87642.1 lysosomal protective protein-like [Planoprotostelium fungivorum] diamond 162 114 1 Eukaryota Amoebozoa   Evosea Variosea Cavosteliida Cavosteliaceae Planoprotostelium Planoprotostelium fungivorum
29284341 29284341 PRJNA263496_P_NODE_24329_length_163_cov_0.894737_g24076_i0 PRJNA263496 24329 163 0.894737 1.45842131 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 69.7 3.26e-12   NR KAH3745561.1 1580589 g24076 i0 62.3 1.95092024539877 53 20 97.5 0 161 3 45 97 KAH3745561.1 NAD-dependent epimerase/dehydratase family protein [Pelomyxa schiedti] diamond 318 69.7 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;