RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA255848" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA255848 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3607456 3607456 PRJNA255848_P_NODE_3163_length_634_cov_2.208547_g2876_i0 PRJNA255848 3163 634 2.208547 14.00218798 Pseudomonadati 3379134 Bacteria Bacteria 1171 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g2876 i0 100 100 634 0 100 0 1 634 701844 701211 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 63400 1171 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
27263795 27263795 PRJNA255848_P_NODE_40683_length_164_cov_1.721739_g40365_i0 PRJNA255848 40683 164 1.721739 2.82365196 Campylobacter jejuni 197 Bacteria Bacteria 107 4.9e-29   NR MDN2761204.1 197 g40365 i0 90.7 0.98780487804878 54 5 98.8 0 164 3 6 59 MDN2761204.1 hypothetical protein [Campylobacter jejuni] diamond 162 107 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29821051 29821051 PRJNA255848_P_NODE_22051_length_212_cov_1.564417_g21733_i0 PRJNA255848 22051 212 1.564417 3.31656404 Campylobacterota bacterium 2026809 Bacteria Bacteria 43.1 0.0184   NR RLA65123.1 2026809 g21733 i0 41 0.863207547169811 61 34 83.5 1 194 18 424 484 RLA65123.1 MAG: hypothetical protein DRQ78_05510, partial [Campylobacterota bacterium] diamond 183 43.1 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;