RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA255848" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA255848 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2332170 2332170 PRJNA255848_P_NODE_23022_length_208_cov_0.974843_g22704_i0 PRJNA255848 23022 208 0.974843 2.02767344 Peredibacter 263370 Bacteria Bacteria 335 1.6199999999999996e-87   NTclustered gi|2631252187|gb|CP139487.1| 28202 g22704 i0 95.673 150.259615384615 208 9 100 0 1 208 512403 512610 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 31254 335 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
11260132 11260132 PRJNA255848_P_NODE_25649_length_197_cov_0.770270_g25331_i0 PRJNA255848 25649 197 0.77027 1.5174319 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 237 4.39e-58   NTclustered gi|507148233|ref|NR_103040.1| 453816 g25331 i0 88.557 474.289340101523 201 16 100 6 1 197 2092 2289 Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence blastn 93435 237 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29207723 29207723 PRJNA255848_P_NODE_42849_length_163_cov_0.894737_g42531_i0 PRJNA255848 42849 163 0.894737 1.45842131 Micavibrio 213485 Bacteria Bacteria 79.7 3.91e-18   NR PZQ45903.1 349221 g42531 i0 89.4 1.74846625766871 47 5 86.5 0 5 145 3 49 PZQ45903.1 MAG: hypothetical protein DI551_06155 [Micavibrio aeruginosavorus] diamond 285 79.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
29947703 29947703 PRJNA255848_P_NODE_47331_length_161_cov_0.910714_g47013_i0 PRJNA255848 47331 161 0.910714 1.46624954 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 90.1 2.6e-21   NR MCB0369869.1 2053517 g47013 i0 84.9 0.987577639751553 53 8 98.8 0 160 2 94 146 MCB0369869.1 uL15 family ribosomal protein [Bdellovibrionales bacterium] diamond 159 90.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;