RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA255848", tax_phylum = "Acidobacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 11 ✖

tax_phylum 1

  • Acidobacteriota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA255848 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1056840 1056840 PRJNA255848_P_NODE_12881_length_282_cov_1.626609_g12563_i0 PRJNA255848 12881 282 1.626609 4.58703738 Terriglobus 392733 Bacteria Bacteria 457 4.72e-124   NTclustered gi|1085637902|emb|LT629690.1| 392734 g12563 i0 97.048 98.2340425531915 271 8 96 0 12 282 4807907 4807637 Terriglobus roseus strain GAS232 genome assembly, chromosome: I blastn 27702 457 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus roseus
5472113 5472113 PRJNA255848_P_NODE_44745_length_162_cov_1.053097_g44427_i0 PRJNA255848 44745 162 1.053097 1.70601714 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 248 1.6e-61   NTclustered gi|2874253796|emb|OY969780.1| 194844 g44427 i0 94.41 31.8518518518519 161 9 99 0 1 161 285177 285017 MAG: uncultured Acidobacteriaceae bacterium isolate MFD09603.bin.c.4 genome assembly, chromosome: 1 blastn 5160 248 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
9296787 9296787 PRJNA255848_P_NODE_45588_length_162_cov_0.902655_g45270_i0 PRJNA255848 45588 162 0.902655 1.4623011 Pyrinomonas methylaliphatogenes 454194 Bacteria Bacteria 88.2 1.23e-18   NR WP_041975381.1 454194 g45270 i0 95 0.740740740740741 40 2 74.1 0 1 120 2458 2497 WP_041975381.1 PKD domain-containing protein [Pyrinomonas methylaliphatogenes] diamond 120 88.2 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae Pyrinomonas Pyrinomonas methylaliphatogenes
16359298 16359298 PRJNA255848_P_NODE_16533_length_245_cov_2.051020_g16215_i0 PRJNA255848 16533 245 2.05102 5.024999 Terriglobus 392733 Bacteria Bacteria 436 5.229999999999999e-118   NTclustered gi|319923767|gb|CP002467.1| 401053 g16215 i0 98.776 120.534693877551 245 3 100 0 1 245 3869452 3869696 Terriglobus saanensis SP1PR4, complete genome blastn 29531 436 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus saanensis
27344840 27344840 PRJNA255848_P_NODE_42103_length_164_cov_0.886957_g41785_i0 PRJNA255848 42103 164 0.886957 1.45460948 Bacteria 2 Bacteria Bacteria 75.9 2.65e-14   NR MDQ6785454.1 1978231 g41785 i0 72.3 4.33536585365854 47 13 86 0 142 2 136 182 MDQ6785454.1 DUF4450 domain-containing protein [Acidobacteriota bacterium] diamond 711 76.6 0.990861618798956 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
27484834 27484834 PRJNA255848_P_NODE_43863_length_163_cov_0.894737_g43545_i0 PRJNA255848 43863 163 0.894737 1.45842131 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 42.4 0.0173   NR HSK70695.1 2283092 g43545 i0 46.3 0.993865030674847 54 18 79.1 2 144 16 247 300 HSK70695.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Pyrinomonadaceae bacterium] diamond 162 42.4 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28053057 28053057 PRJNA255848_P_NODE_46025_length_162_cov_0.902655_g45707_i0 PRJNA255848 46025 162 0.902655 1.4623011 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 90.5 1.81e-19   NR HVJ26377.1 2910147 g45707 i0 90.6 0.981481481481482 53 5 98.1 0 160 2 191 243 HVJ26377.1 ABC transporter permease [Vicinamibacterales bacterium] diamond 159 90.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28134171 28134171 PRJNA255848_P_NODE_42365_length_164_cov_0.886957_g42047_i0 PRJNA255848 42365 164 0.886957 1.45460948 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 46.2 7.6e-4   NR MEP6782237.1 1978231 g42047 i0 100 1.09756097560976 20 0 36.6 0 1 60 453 472 MEP6782237.1 amidohydrolase family protein [Acidobacteriota bacterium] diamond 180 46.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28260144 28260144 PRJNA255848_P_NODE_29546_length_183_cov_1.141791_g29228_i0 PRJNA255848 29546 183 1.141791 2.08947753 Bryobacterales 332160 Bacteria Bacteria 41.6 0.0429   NR MEO8592242.1 2068625 g29228 i0 42.1 1.26229508196721 38 22 62.3 0 166 53 638 675 MEO8592242.1 hypothetical protein [Candidatus Solibacter sp.] diamond 231 42 0.990476190476191 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter sp.
30218074 30218074 PRJNA255848_P_NODE_36172_length_167_cov_0.864407_g35854_i0 PRJNA255848 36172 167 0.864407 1.44355969 Bacteria 2 Bacteria Bacteria 97.1 9.13e-22   NR OJV44669.1 1895690 g35854 i0 81.8 1.97604790419162 55 10 98.8 0 2 166 354 408 OJV44669.1 MAG: hypothetical protein BGO25_04685 [Acidobacteriales bacterium 59-55] diamond 330 97.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales     Acidobacteriales bacterium 59-55
31843925 31843925 PRJNA255848_P_NODE_41557_length_164_cov_0.886957_g41239_i0 PRJNA255848 41557 164 0.886957 1.45460948 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 106 1.14e-25   NR HET9704812.1 2910147 g41239 i0 92.6 1.97560975609756 54 4 98.8 0 3 164 129 182 HET9704812.1 amidohydrolase family protein [Vicinamibacterales bacterium] diamond 324 106 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;