RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA255848", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA255848 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2919391 2919391 PRJNA255848_P_NODE_41123_length_164_cov_0.886957_g40805_i0 PRJNA255848 41123 164 0.886957 1.45460948 Labilithrix luteola 1391654 Bacteria Bacteria 298 1.59e-76   NTclustered gi|913610804|gb|CP012333.1| 1391654 g40805 i0 99.39 152.189024390244 164 1 100 0 1 164 3942809 3942646 Labilithrix luteola strain DSM 27648, complete genome blastn 24959 298 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix luteola
26915790 26915790 PRJNA255848_P_NODE_14802_length_260_cov_1.450237_g14484_i0 PRJNA255848 14802 260 1.450237 3.7706162 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.0127   NR NQW44782.1 2026735 g14484 i0 32.1 0.934615384615385 81 37 86.5 3 232 8 322 390 NQW44782.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 243 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29316097 29316097 PRJNA255848_P_NODE_38149_length_166_cov_0.871795_g37831_i0 PRJNA255848 38149 166 0.871795 1.4471797 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.00388   NR HNS90966.1 2026735 g37831 i0 45.2 0.759036144578313 42 23 75.9 0 40 165 759 800 HNS90966.1 calcium-binding protein [Deltaproteobacteria bacterium] diamond 126 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32255761 32255761 PRJNA255848_P_NODE_27058_length_191_cov_1.619718_g26740_i0 PRJNA255848 27058 191 1.619718 3.09366138 Hyalangium versicolor 2861190 Bacteria Bacteria 42 0.0354   NR WP_224361685.1 2861190 g26740 i0 52.6 0.596858638743455 38 18 59.7 0 170 57 6 43 WP_224361685.1 potassium transporter Kup [Hyalangium versicolor] diamond 114 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium versicolor

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;