RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA255848", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA255848 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5472006 5472006 PRJNA255848_P_NODE_22505_length_210_cov_1.267081_g22187_i0 PRJNA255848 22505 210 1.267081 2.6608701 Malacoplasma microti 38746 Bacteria Bacteria 329 7.6e-86   NTclustered gi|299851939|gb|HM135466.1| 38746 g22187 i0 96.059 134.980952380952 203 7 97 1 4 206 1608 1407 Mycoplasma microti strain IL371 23S ribosomal RNA gene, partial sequence blastn 28346 329 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Malacoplasma Malacoplasma microti
11260025 11260025 PRJNA255848_P_NODE_14669_length_261_cov_2.240566_g14351_i0 PRJNA255848 14669 261 2.240566 5.84787726 Spiroplasma 2132 Bacteria Bacteria 311 3.56e-80   NTclustered gi|835320153|gb|CP011856.1| 315358 g14351 i0 88.168 627.758620689655 262 29 100 2 1 261 760028 760288 Spiroplasma eriocheiris strain DSM 21848, complete genome blastn 163845 311 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma eriocheiris
28702491 28702491 PRJNA255848_P_NODE_36867_length_166_cov_1.307692_g36549_i0 PRJNA255848 36867 166 1.307692 2.17076872 root 1 Root_unresolved Root_unresolved 101 2.7699999999999996e-23   NR WP_206602619.1 2094 g36549 i0 94.4 1333.93373493976 54 3 97.6 0 3 164 164 217 WP_206602619.1 cbb3-type cytochrome c oxidase subunit I [Mycoplasmopsis arginini] diamond 221433 102 0.990196078431373 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis arginini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;