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contig_metadata

4 rows where bioproject = "PRJNA255848", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA255848 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5472061 5472061 PRJNA255848_P_NODE_36825_length_166_cov_1.512821_g36507_i0 PRJNA255848 36825 166 1.512821 2.51128286 root 1 Root_unresolved Root_unresolved 85.5 1.14e-17   NR TMW60811.1 41045 g36507 i0 75 6.66867469879518 52 12 94 1 8 163 594 644 TMW60811.1 hypothetical protein Poli38472_000853 [Pythium oligandrum] diamond 1107 85.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
6746362 6746362 PRJNA255848_P_NODE_23606_length_205_cov_1.557692_g23288_i0 PRJNA255848 23606 205 1.557692 3.1932686 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 340 3.41e-89   NTclustered gi|325194231|emb|FR825088.1| 890382 g23288 i0 96.585 1.44390243902439 205 7 100 0 1 205 580 784 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 296 340 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
20770220 20770220 PRJNA255848_P_NODE_32397_length_174_cov_1.632000_g32079_i0 PRJNA255848 32397 174 1.632 2.83968 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 309 7.87e-80   NTclustered gi|53693101|gb|AY742752.1| 123356 g32079 i0 98.851 100.022988505747 174 1 99 1 1 173 1299 1472 Hyaloperonospora parasitica 18S ribosomal RNA gene, partial sequence blastn 17404 309 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
22045372 22045372 PRJNA255848_P_NODE_8778_length_355_cov_16.875817_g8460_i0 PRJNA255848 8778 355 16.875817 59.90915035 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 459 1.6899999999999998e-124   NTclustered gi|325195057|emb|FR825852.1| 890382 g8460 i0 90.028 85.0788732394366 361 27 100 7 1 355 453 96 Albugo laibachii Nc14, genomic contig CONTIG_2891_NC14_v4_540_391 blastn 30203 459 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;