RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA255848", tax_clade = "Sar" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA255848 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4195810 4195810 PRJNA255848_P_NODE_31244_length_178_cov_1.186047_g30926_i0 PRJNA255848 31244 178 1.186047 2.11116366 uncultured marine diatom 285226 SAR_Eukaryotes SAR_Eukaryotes 58.4 3.24e-4   NTclustered gi|223047888|gb|FJ032658.1| 285226 g30926 i0 100 3.70786516853933 31 0 17 0 73 103 1621 1591 Uncultured marine diatom clone DH22_2A36 28S ribosomal RNA gene, partial sequence blastn 660 58.4 1 Eukaryota Sar   Bacillariophyta         uncultured marine diatom
26884333 26884333 PRJNA255848_P_NODE_40441_length_165_cov_0.879310_g40123_i0 PRJNA255848 40441 165 0.87931 1.4508615 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 63.5 5.78e-10   NR EJK66000.1 159749 g40123 i0 51.9 1.98181818181818 54 25 98.2 1 163 2 559 611 EJK66000.1 hypothetical protein THAOC_13099 [Thalassiosira oceanica] diamond 327 63.5 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;