RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA255848", tax_clade = "Opisthokonta" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 11 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 11 ✖

bioproject 1

  • PRJNA255848 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1643505 1643505 PRJNA255848_P_NODE_35402_length_167_cov_0.864407_g35084_i0 PRJNA255848 35402 167 0.864407 1.44355969 Fimicolochytrium jonesii 1396493 Fungi Fungi 122 1.0499999999999999e-23   NTclustered gi|2432075899|ref|XM_053070313.1| 1396493 g35084 i0 81.944 12.5508982035928 144 26 86 0 3 146 435 292 Fimicolochytrium jonesii histone H3 (EV422DRAFT_528995), mRNA blastn 2096 122 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
26694093 26694093 PRJNA255848_P_NODE_47081_length_161_cov_0.910714_g46763_i0 PRJNA255848 47081 161 0.910714 1.46624954 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 55.5 3.94e-7   NR KAH9248503.1 1357716 g46763 i0 51 0.91304347826087 49 24 91.3 0 153 7 487 535 KAH9248503.1 hypothetical protein BASA81_013829 [Batrachochytrium salamandrivorans] diamond 147 55.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
27263797 27263797 PRJNA255848_P_NODE_47683_length_161_cov_0.910714_g47365_i0 PRJNA255848 47683 161 0.910714 1.46624954 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 60.8 4.08e-9   NR KAH9251089.1 1357716 g47365 i0 50 0.968944099378882 52 25 96.9 1 1 156 127 177 KAH9251089.1 hypothetical protein BASA81_010988 [Batrachochytrium salamandrivorans] diamond 156 60.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
27295289 27295289 PRJNA255848_P_NODE_35523_length_167_cov_0.864407_g35205_i0 PRJNA255848 35523 167 0.864407 1.44355969 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 63.5 6.04e-10   NR KAH9257680.1 1357716 g35205 i0 59.6 0.844311377245509 47 18 82.6 1 166 29 23 69 KAH9257680.1 hypothetical protein BASA81_004138 [Batrachochytrium salamandrivorans] diamond 141 63.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
27453435 27453435 PRJNA255848_P_NODE_43343_length_163_cov_0.894737_g43025_i0 PRJNA255848 43343 163 0.894737 1.45842131 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 74.3 7.89e-14   NR KAH9258872.1 1357716 g43025 i0 69.2 0.957055214723926 52 16 95.7 0 5 160 276 327 KAH9258872.1 phosphoserine aminotransferase [Batrachochytrium salamandrivorans] diamond 156 74.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
31147851 31147851 PRJNA255848_P_NODE_44935_length_162_cov_0.902655_g44617_i0 PRJNA255848 44935 162 0.902655 1.4623011 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 51.2 1.29e-5   NR KAH9246589.1 1357716 g44617 i0 49.1 0.981481481481482 53 26 96.3 1 159 4 226 278 KAH9246589.1 hypothetical protein BASA81_015854 [Batrachochytrium salamandrivorans] diamond 159 51.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
31591203 31591203 PRJNA255848_P_NODE_35936_length_167_cov_0.864407_g35618_i0 PRJNA255848 35936 167 0.864407 1.44355969 Spizellomyces punctatus DAOM BR117 645134 Fungi Fungi 72.4 1.85e-14   NR XP_016605787.1 645134 g35618 i0 86.5 3.32335329341317 37 5 66.5 0 112 2 2 38 XP_016605787.1 uncharacterized protein SPPG_06748 [Spizellomyces punctatus DAOM BR117] diamond 555 72.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
31654081 31654081 PRJNA255848_P_NODE_37957_length_166_cov_0.871795_g37639_i0 PRJNA255848 37957 166 0.871795 1.4471797 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 69.3 2.04e-13   NR KAH9255335.1 1357716 g37639 i0 73.1 0.939759036144578 52 14 94 0 165 10 59 110 KAH9255335.1 hypothetical protein BASA81_006787 [Batrachochytrium salamandrivorans] diamond 156 69.3 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
31812423 31812423 PRJNA255848_P_NODE_41977_length_164_cov_0.886957_g41659_i0 PRJNA255848 41977 164 0.886957 1.45460948 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 53.9 1.44e-6   NR KAH9260782.1 1357716 g41659 i0 49.1 1.71951219512195 53 25 93.3 1 12 164 270 322 KAH9260782.1 hypothetical protein BASA81_001249 [Batrachochytrium salamandrivorans] diamond 282 53.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans
32223825 32223825 PRJNA255848_P_NODE_45678_length_162_cov_0.902655_g45360_i0 PRJNA255848 45678 162 0.902655 1.4623011 Chytriomyces sp. MP71 1882861 Fungi Fungi 48.5 1.16e-4   NR KAI8618575.1 1882861 g45360 i0 40.7 2.85185185185185 54 30 96.3 1 1 156 311 364 KAI8618575.1 lariat debranching enzyme, C-terminal domain-containing protein [Chytriomyces sp. MP71] diamond 462 48.5 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae Chytriomyces Chytriomyces sp. MP71
32823674 32823674 PRJNA255848_P_NODE_30720_length_179_cov_1.569231_g30402_i0 PRJNA255848 30720 179 1.569231 2.80892349 Batrachochytrium salamandrivorans 1357716 Fungi Fungi 78.6 3.71e-15   NR KAH9255806.1 1357716 g30402 i0 69.5 0.988826815642458 59 18 98.9 0 178 2 709 767 KAH9255806.1 hypothetical protein BASA81_006207 [Batrachochytrium salamandrivorans] diamond 177 78.6 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium salamandrivorans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;