RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA255848", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA255848 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14397689 14397689 PRJNA255848_P_NODE_25692_length_196_cov_2.061224_g25374_i0 PRJNA255848 25692 196 2.061224 4.03999904 Rubrivirga sp. IMCC45206 3391614 Bacteria Bacteria 254 4.33e-63   NTclustered gi|2890849321|gb|CP177357.1| 3391614 g25374 i0 90.957 248.933673469388 188 17 96 0 7 194 3832901 3833088 Rubrivirga sp. IMCC45206 chromosome, complete genome blastn 48791 254 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC45206
23320723 23320723 PRJNA255848_P_NODE_34559_length_168_cov_1.285714_g34241_i0 PRJNA255848 34559 168 1.285714 2.15999952 Rhodothermales bacterium 2306054 Bacteria Bacteria 222 1.02e-53   NTclustered gi|2621703415|emb|OY762508.1| 2306054 g34241 i0 90.643 25.3928571428571 171 10 100 6 1 168 2026020 2025853 MAG: Rhodothermales bacterium isolate 68d32973-4033-4094-87ac-516b823d41a0 genome assembly, chromosome: 1 blastn 4266 222 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
24594865 24594865 PRJNA255848_P_NODE_30260_length_181_cov_1.090909_g29942_i0 PRJNA255848 30260 181 1.090909 1.97454529 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 274 3.0099999999999997e-69   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g29942 i0 93.956 991.78453038674 182 9 100 2 1 181 1307587 1307767 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 179513 274 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;