RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA255848" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA255848 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11260118 11260118 PRJNA255848_P_NODE_24189_length_203_cov_1.077922_g23871_i0 PRJNA255848 24189 203 1.077922 2.18818166 Vannellidae 95227 Discosea other_Eukaryota 243 9.78e-60   NTclustered gi|327391633|gb|HM363631.1| 1002218 g23871 i0 95.395 74.8965517241379 152 7 75 0 1 152 320 471 Vannella sp. GERL34 small subunit ribosomal RNA gene, partial sequence blastn 15204 243 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. GERL34
29018427 29018427 PRJNA255848_P_NODE_35488_length_167_cov_0.864407_g35170_i0 PRJNA255848 35488 167 0.864407 1.44355969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 48.5 1.21e-4   NR KAH3767025.1 1580589 g35170 i0 42 3.8622754491018 50 29 89.8 0 16 165 331 380 KAH3767025.1 peptidase S41 family protein [Pelomyxa schiedti] diamond 645 48.9 0.991820040899796 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30611022 30611022 PRJNA255848_P_NODE_39553_length_165_cov_0.879310_g39235_i0 PRJNA255848 39553 165 0.87931 1.4508615 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 62.4 1.84e-10   NR KYR02504.1 361077 g39235 i0 65.2 0.836363636363636 46 16 83.6 0 163 26 97 142 KYR02504.1 actin binding protein [Tieghemostelium lacteum] diamond 138 62.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;