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contig_metadata

13 rows where bioproject = "PRJNA235310" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 13 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA235310 · 13 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10571467 10571467 PRJNA235310_P_NODE_669_length_474_cov_12.367059_g643_i0 PRJNA235310 669 474 12.367059 58.61985966 Pristionchus pauli 376545 Nematoda Nematoda 292 2.5e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g643 i0 81.492 4.75949367088608 362 61 76 6 48 406 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
11259841 11259841 PRJNA235310_P_NODE_1969_length_281_cov_1.655172_g1943_i0 PRJNA235310 1969 281 1.655172 4.65103332 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 158 5.34e-34   NTclustered gi|687866031|emb|LK927873.1| 6239 g1943 i0 87.5 136.355871886121 136 17 48 0 1 136 46183 46318 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000295 blastn 38316 159 0.993710691823899 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
13810054 13810054 PRJNA235310_P_NODE_3791_length_194_cov_1.075862_g3765_i0 PRJNA235310 3791 194 1.075862 2.08717228 Opisthokonta 33154 Nematoda Nematoda 183 5.69e-42   NTclustered gi|675118991|gb|KJ877375.1| 1538693 g3765 i0 85.393 54.288659793814404 178 24 91 2 18 194 408 232 Diplogastrellus sp. VS-2014 strain RS5608 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 10532 183 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus sp. VS-2014
14396426 14396426 PRJNA235310_P_NODE_452_length_551_cov_7.432271_g428_i0 PRJNA235310 452 551 7.432271 40.95181321 Opisthokonta 33154 Nematoda Nematoda 216 3.4499999999999993e-68   NR KFD50978.1 68888 g428 i0 71.6 17.1778584392015 148 42 80.6 0 546 103 51 198 KFD50978.1 hypothetical protein M513_08161, partial [Trichuris suis] diamond 9465 216 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
17634245 17634245 PRJNA235310_P_NODE_474_length_540_cov_16.926680_g450_i0 PRJNA235310 474 540 16.92668 91.404072 Metazoa 33208 Nematoda Nematoda 324 1.02e-83   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g450 i0 82.692 66.6333333333333 364 63 67 0 65 428 55 418 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 35982 327 0.990825688073395 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
18219079 18219079 PRJNA235310_P_NODE_575_length_503_cov_2.781938_g550_i0 PRJNA235310 575 503 2.781938 13.99314814 Metazoa 33208 Nematoda Nematoda 139 2.68e-35   NR KAH7732279.1 70226 g550 i0 57.5 3.73359840954274 120 44 67.4 1 112 450 26 145 KAH7732279.1 procollagen-proline dioxygenase beta subunit [Aphelenchoides avenae] diamond 1878 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
20768910 20768910 PRJNA235310_P_NODE_477_length_539_cov_6.659184_g453_i0 PRJNA235310 477 539 6.659184 35.89300176 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.81e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g453 i0 81.166 24.7458256029685 223 28 40 11 249 464 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
28653061 28653061 PRJNA235310_P_NODE_1287_length_355_cov_1.833333_g1261_i0 PRJNA235310 1287 355 1.833333 6.50833215 Enterobius vermicularis 51028 Nematoda Nematoda 153 1.03e-42   NR VDD94634.1 51028 g1261 i0 83.5 14.4169014084507 85 14 71.8 0 353 99 260 344 VDD94634.1 unnamed protein product [Enterobius vermicularis] diamond 5118 153 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Oxyuridae Enterobius Enterobius vermicularis
31116406 31116406 PRJNA235310_P_NODE_4915_length_169_cov_0.866667_g4889_i0 PRJNA235310 4915 169 0.866667 1.46466723 Pristionchus entomophagus 358040 Nematoda Nematoda 52.8 4.04e-6   NR GMS80544.1 358040 g4889 i0 44.1 1.04733727810651 59 23 87 2 5 151 395 453 GMS80544.1 hypothetical protein PENTCL1PPCAC_2719, partial [Pristionchus entomophagus] diamond 177 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
31116408 31116408 PRJNA235310_P_NODE_6295_length_162_cov_0.920354_g6269_i0 PRJNA235310 6295 162 0.920354 1.49097348 Aphelenchoides besseyi 269767 Nematoda Nematoda 95.5 3.1600000000000003e-21   NR KAI6214930.1 269767 g6269 i0 77.4 16.6851851851852 53 12 98.1 0 161 3 942 994 KAI6214930.1 Dihydropyrimidine dehydrogenase [NADP(+)] [Aphelenchoides besseyi] diamond 2703 96.3 0.991692627206646 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
31274654 31274654 PRJNA235310_P_NODE_4155_length_184_cov_1.925926_g4129_i0 PRJNA235310 4155 184 1.925926 3.54370384 Caenorhabditis angaria 860376 Nematoda Nematoda 78.6 3.86e-15   NR CAI5454464.1 860376 g4129 i0 61.7 1.95652173913043 60 23 97.8 0 182 3 281 340 CAI5454464.1 unnamed protein product [Caenorhabditis angaria] diamond 360 78.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria
31355856 31355856 PRJNA235310_P_NODE_4116_length_185_cov_1.911765_g4090_i0 PRJNA235310 4116 185 1.911765 3.53676525 Rhabditida 6236 Nematoda Nematoda 43.1 0.00875   NR KAL3998645.1 6277 g4090 i0 50 5.83783783783784 40 19 64.9 1 6 125 131 169 KAL3998645.1 ETC complex I subunit conserved region family protein [Acanthocheilonema viteae] diamond 1080 43.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae
32160607 32160607 PRJNA235310_P_NODE_3458_length_203_cov_1.181818_g3432_i0 PRJNA235310 3458 203 1.181818 2.39909054 Trichuris suis 68888 Nematoda Nematoda 50.4 4.3e-5   NR KHJ48732.1 68888 g3432 i0 36.9 2.83743842364532 65 41 96.1 0 1 195 1644 1708 KHJ48732.1 hypothetical protein D918_01036 [Trichuris suis] diamond 576 50.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;